Variant report

Variant	rs62523018
Chromosome Location	chr8:94992126-94992127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:94928511..94930316-chr8:94990324..94992311,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264448	Chromatin interaction
ENSG00000164951	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs16916320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916327	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3115936	0.85[ASN][1000 genomes]
rs3115937	0.85[ASN][1000 genomes]
rs3115941	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3115946	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3133997	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3133999	0.82[ASN][1000 genomes]
rs3134000	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3134001	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3134002	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3134003	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3134004	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3134005	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3134006	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3134007	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3134008	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3134009	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3134011	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3134013	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3134016	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58866863	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61495155	0.89[EUR][1000 genomes]
rs62522989	0.85[ASN][1000 genomes]
rs62523005	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62523006	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62523009	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62523010	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62523011	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62523014	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62523015	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62523016	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62523017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62523019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989092	0.89[EUR][1000 genomes]
rs7006289	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7836063	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7840040	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518975	chr8:94985722-94992958	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:94989600-94994400	Enhancers	Fetal Intestine Small	intestine
2	chr8:94991200-94992600	Enhancers	Gastric	stomach
3	chr8:94991200-94993000	Enhancers	Pancreas	Pancrea
4	chr8:94991200-94993200	Enhancers	Stomach Mucosa	stomach
5	chr8:94991200-94993600	Enhancers	Ovary	ovary
6	chr8:94991200-94994400	Enhancers	Fetal Intestine Large	intestine
7	chr8:94991400-94992400	Enhancers	Placenta	Placenta
8	chr8:94991400-94993400	Enhancers	Fetal Lung	lung
9	chr8:94991400-94993400	Weak transcription	HMEC	breast
10	chr8:94991600-94993200	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr8:94991800-94992200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:94991800-94992400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr8:94991800-94992400	Enhancers	Colonic Mucosa	Colon
14	chr8:94991800-94992400	Enhancers	Esophagus	oesophagus
15	chr8:94991800-94992400	Enhancers	Left Ventricle	heart
16	chr8:94991800-94992400	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr8:94991800-94992400	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr8:94991800-94992600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr8:94991800-94992600	Enhancers	Lung	lung
20	chr8:94991800-94992600	Enhancers	Right Atrium	heart
21	chr8:94991800-94992800	Enhancers	Fetal Stomach	stomach
22	chr8:94991800-94993000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:94991800-94993000	Enhancers	Liver	Liver
24	chr8:94991800-94993000	Enhancers	Brain Hippocampus Middle	brain
25	chr8:94991800-94993000	Enhancers	Brain Substantia Nigra	brain
26	chr8:94991800-94993200	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr8:94991800-94993200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:94991800-94993200	Enhancers	Colon Smooth Muscle	Colon
29	chr8:94991800-94993400	Enhancers	Stomach Smooth Muscle	stomach
30	chr8:94991800-94993600	Enhancers	Right Ventricle	heart
31	chr8:94992000-94992200	Enhancers	Brain Germinal Matrix	brain
32	chr8:94992000-94992400	Enhancers	Aorta	Aorta
33	chr8:94992000-94992400	Enhancers	Brain Cingulate Gyrus	brain
34	chr8:94992000-94992400	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr8:94992000-94992400	Enhancers	Small Intestine	intestine
36	chr8:94992000-94992400	Enhancers	Spleen	Spleen
37	chr8:94992000-94992600	Flanking Active TSS	Duodenum Mucosa	Duodenum
38	chr8:94992000-94993000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr8:94992000-94993000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr8:94992000-94993200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr8:94992000-94993200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr8:94992000-94993200	Enhancers	Adipose Nuclei	Adipose
43	chr8:94992000-94993200	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr8:94992000-94993600	Enhancers	Fetal Muscle Trunk	muscle
45	chr8:94992000-94995000	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links