Variant report
| Variant | rs62528037 |
|---|---|
| Chromosome Location | chr8:110872898-110872899 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10090049 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10096412 | 0.83[ASN][1000 genomes] |
| rs11997465 | 0.83[ASN][1000 genomes] |
| rs12679278 | 0.84[ASN][1000 genomes] |
| rs1505650 | 0.84[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1505651 | 0.83[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1587943 | 0.83[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs16880131 | 0.83[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs16880142 | 0.83[ASN][1000 genomes] |
| rs16880145 | 0.85[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs16880151 | 0.83[ASN][1000 genomes] |
| rs1809991 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2129035 | 0.80[EUR][1000 genomes] |
| rs2350411 | 0.87[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4389901 | 0.81[AMR][1000 genomes] |
| rs4585726 | 0.84[ASN][1000 genomes] |
| rs4735141 | 0.82[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4735142 | 0.83[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs62527999 | 0.80[EUR][1000 genomes] |
| rs6469287 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7000312 | 0.82[ASN][1000 genomes] |
| rs7013309 | 0.83[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7814174 | 0.80[EUR][1000 genomes] |
| rs7824730 | 0.84[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7833816 | 0.84[ASN][1000 genomes] |
| rs7834319 | 0.84[ASN][1000 genomes] |
| rs905962 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9773536 | 0.87[AMR][1000 genomes];0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033321 | chr8:110826297-111131801 | Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1019284 | chr8:110866196-111221890 | Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:110871200-110877800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
