Variant report

Variant	rs62530091
Chromosome Location	chr9:656452-656453
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 186 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10115825	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10116503	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10156581	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10156671	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1022829	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1022831	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1022832	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10491595	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10491596	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10815367	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10815371	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10815372	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10815373	0.87[EUR][1000 genomes]
rs10815384	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10815385	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10815386	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10815387	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10815389	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10815404	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10975476	0.90[EUR][1000 genomes]
rs10975478	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10975482	0.80[EUR][1000 genomes]
rs10975486	0.90[EUR][1000 genomes]
rs10975492	0.88[EUR][1000 genomes]
rs10975493	0.94[EUR][1000 genomes]
rs10975496	0.87[EUR][1000 genomes]
rs10975502	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10975503	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10975505	0.83[EUR][1000 genomes]
rs10975510	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10975522	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10975559	0.90[EUR][1000 genomes]
rs10975560	0.90[EUR][1000 genomes]
rs10975576	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12056972	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12056978	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12056988	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12057074	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12238166	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12337054	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12337056	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12337061	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12338965	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12339054	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16921441	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16921797	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16921901	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16924585	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17431629	0.91[EUR][1000 genomes]
rs28513073	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28626827	0.91[EUR][1000 genomes]
rs28744560	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34147505	0.86[EUR][1000 genomes]
rs55842631	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56036818	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56296348	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58172099	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59521969	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62530062	0.84[EUR][1000 genomes]
rs62530079	0.88[EUR][1000 genomes]
rs62530088	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62530090	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62530109	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62530114	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62530115	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62530116	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62530117	0.91[EUR][1000 genomes]
rs62530118	0.91[EUR][1000 genomes]
rs62530119	0.91[EUR][1000 genomes]
rs62530120	0.91[EUR][1000 genomes]
rs62531168	0.91[EUR][1000 genomes]
rs62531169	0.91[EUR][1000 genomes]
rs62531170	0.91[EUR][1000 genomes]
rs62531171	0.91[EUR][1000 genomes]
rs62531172	0.91[EUR][1000 genomes]
rs62531175	0.91[EUR][1000 genomes]
rs62531177	0.91[EUR][1000 genomes]
rs7024722	0.91[EUR][1000 genomes]
rs7030653	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72691307	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72691308	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73370814	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7865660	0.86[EUR][1000 genomes]
rs7874205	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:102 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv949051	chr9:40910-925305	Bivalent Enhancer Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1015338	chr9:209254-808057	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1034557	chr9:209254-964422	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv539828	chr9:209254-964422	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv1016963	chr9:214166-789985	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv539843	chr9:214166-789985	Genic enhancers Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv1031297	chr9:214366-659340	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv539860	chr9:214366-659340	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv539861	chr9:214366-805666	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
11	nsv1018491	chr9:222282-715668	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
12	nsv539878	chr9:222282-715668	Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
13	nsv533086	chr9:280255-753314	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
14	nsv429976	chr9:302324-678088	Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
15	nsv1016589	chr9:304385-730233	Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
16	nsv539886	chr9:304385-730233	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
17	nsv533964	chr9:314969-910448	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
18	nsv1031809	chr9:327139-715668	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
19	nsv931598	chr9:349034-862771	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
20	nsv1027367	chr9:366387-697983	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
21	nsv1027550	chr9:366387-715668	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
22	nsv530918	chr9:381430-839211	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
23	esv2752307	chr9:382810-733212	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
24	nsv891974	chr9:395025-685819	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
25	esv2829905	chr9:395025-712156	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
26	nsv1021206	chr9:399146-911325	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
27	nsv891977	chr9:419399-684160	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
28	nsv1029985	chr9:459016-813600	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
29	nsv539895	chr9:459016-813600	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
30	nsv916532	chr9:459131-862833	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
31	nsv1025492	chr9:478813-1157169	Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
32	nsv539897	chr9:478813-1157169	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
33	nsv891980	chr9:484850-686301	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
34	nsv1026988	chr9:495809-827580	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
35	nsv539898	chr9:495809-827580	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
36	nsv1017472	chr9:518235-742803	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
37	nsv1023357	chr9:518235-775704	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
38	esv2758175	chr9:524413-853033	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
39	esv2759655	chr9:524413-853033	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
40	nsv427836	chr9:524413-853033	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
41	nsv1033964	chr9:525037-816742	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
42	nsv1019676	chr9:525752-804603	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
43	nsv1021488	chr9:525752-813181	Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
44	nsv1031342	chr9:525752-814210	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
45	nsv1018759	chr9:525752-816742	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
46	nsv613019	chr9:526772-811618	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
47	nsv1016312	chr9:532699-813600	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
48	nsv539901	chr9:532699-813600	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
49	nsv1025677	chr9:534089-814330	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
50	nsv539902	chr9:534089-814330	Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62530091	ANKRD15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:650800-668000	Weak transcription	Fetal Intestine Small	intestine
2	chr9:650800-670400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:651200-660600	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr9:651600-657200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:652800-657800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:652800-658000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr9:652800-658400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr9:653000-658400	Enhancers	Fetal Heart	heart
9	chr9:653400-698000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:653800-657200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:654400-657600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:654400-659800	Weak transcription	Dnd41	blood
13	chr9:654800-657000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr9:655000-656800	Enhancers	Left Ventricle	heart
15	chr9:655000-662200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr9:655200-656600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:655200-656800	Enhancers	Right Atrium	heart
18	chr9:655200-657400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:655200-663600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr9:655400-656600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr9:655400-656600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr9:655400-656800	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr9:655400-656800	Enhancers	Psoas Muscle	Psoas
24	chr9:655400-656800	Enhancers	Right Ventricle	heart
25	chr9:655400-656800	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr9:655400-657000	Enhancers	NHDF-Ad	bronchial
27	chr9:655400-657600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr9:655400-657800	Enhancers	HMEC	breast
29	chr9:655400-658000	Enhancers	Brain Cingulate Gyrus	brain
30	chr9:655400-660200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr9:655600-656600	Enhancers	Fetal Muscle Leg	muscle
32	chr9:655600-656600	Enhancers	Placenta	Placenta
33	chr9:655600-656800	Enhancers	Liver	Liver
34	chr9:655600-657000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr9:655600-657000	Enhancers	Osteobl	bone
36	chr9:655600-657800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr9:655600-658200	Enhancers	Primary B cells from peripheral blood	blood
38	chr9:655800-656600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr9:655800-656600	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr9:655800-656600	Enhancers	Aorta	Aorta
41	chr9:655800-656600	Enhancers	Fetal Lung	lung
42	chr9:655800-656600	Enhancers	Gastric	stomach
43	chr9:655800-656600	Enhancers	NHLF	lung
44	chr9:655800-656800	Enhancers	Brain Substantia Nigra	brain
45	chr9:655800-656800	Enhancers	Pancreas	Pancrea
46	chr9:655800-657200	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr9:655800-657200	Enhancers	Brain Angular Gyrus	brain
48	chr9:655800-657400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr9:655800-657400	Enhancers	Brain Anterior Caudate	brain
50	chr9:655800-657400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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