Variant report

Variant	rs625318
Chromosome Location	chr2:33670020-33670021
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11902602	0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap]
rs12999028	1.00[AMR][1000 genomes]
rs17013134	1.00[MEX][hapmap]
rs636099	1.00[AMR][1000 genomes]
rs646374	0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap]
rs7591317	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	esv2762447	chr2:33643724-33674484	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv517737	chr2:33664350-33676440	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33662800-33670200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr2:33663200-33671400	Weak transcription	Right Ventricle	heart
3	chr2:33663600-33670200	Weak transcription	Fetal Muscle Leg	muscle
4	chr2:33667400-33671400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:33668000-33670400	Enhancers	Adipose Nuclei	Adipose
6	chr2:33668400-33673200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:33668600-33670200	Enhancers	Psoas Muscle	Psoas
8	chr2:33668800-33685200	Weak transcription	HUVEC	blood vessel
9	chr2:33669200-33671200	Enhancers	Fetal Heart	heart
10	chr2:33669600-33670200	Weak transcription	Left Ventricle	heart
11	chr2:33670000-33670200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr2:33670000-33670200	Enhancers	Brain Hippocampus Middle	brain
13	chr2:33670000-33670400	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr2:33670000-33670400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr2:33670000-33670400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr2:33670000-33671200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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