Variant report

Variant	rs62571032
Chromosome Location	chr9:15521943-15521944
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10124624	0.96[ASN][1000 genomes]
rs10283923	0.81[ASN][1000 genomes]
rs10283927	0.81[ASN][1000 genomes]
rs12336503	0.81[ASN][1000 genomes]
rs12336509	0.81[ASN][1000 genomes]
rs12339417	0.81[ASN][1000 genomes]
rs12683553	0.81[ASN][1000 genomes]
rs16933311	0.81[ASN][1000 genomes]
rs16933348	0.86[ASN][1000 genomes]
rs1828382	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1828383	0.96[ASN][1000 genomes]
rs2175257	0.81[ASN][1000 genomes]
rs55771541	0.82[ASN][1000 genomes]
rs56361298	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57142629	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57191285	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57467578	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57849124	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58607272	0.96[ASN][1000 genomes]
rs58915725	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59355275	0.81[EUR][1000 genomes]
rs59639757	0.82[ASN][1000 genomes]
rs62571010	0.81[ASN][1000 genomes]
rs62571015	0.81[EUR][1000 genomes]
rs62571016	0.81[EUR][1000 genomes]
rs62571017	0.81[EUR][1000 genomes]
rs62571021	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62571022	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62571023	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62571024	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62571027	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62571030	0.98[ASN][1000 genomes]
rs62571031	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62571033	0.81[EUR][1000 genomes]
rs6474927	0.98[ASN][1000 genomes]
rs7018658	0.81[ASN][1000 genomes]
rs7023730	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408328	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73408340	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73644657	0.98[ASN][1000 genomes]
rs7852774	0.96[ASN][1000 genomes]
rs7856710	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7857933	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7863139	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517975	chr9:15286446-15534070	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv892628	chr9:15420805-15528290	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv892629	chr9:15516375-15634326	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62571032	PSIP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15521200-15522000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:15521400-15523000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:15521800-15522000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:15521800-15522200	Enhancers	Primary hematopoietic stem cells	blood
5	chr9:15521800-15522400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr9:15521800-15522400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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