Variant report

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10457930	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1149271	0.84[CEU][hapmap]
rs12208565	1.00[ASN][1000 genomes]
rs1222375	1.00[ASN][1000 genomes]
rs2254178	1.00[ASN][1000 genomes]
rs2399557	1.00[ASN][1000 genomes]
rs2579929	1.00[ASN][1000 genomes]
rs2764271	1.00[ASN][1000 genomes]
rs2787573	1.00[ASN][1000 genomes]
rs2852497	1.00[ASN][1000 genomes]
rs2852503	0.85[CEU][hapmap]
rs2852505	1.00[ASN][1000 genomes]
rs2852507	0.85[CEU][hapmap]
rs2852509	0.85[CEU][hapmap]
rs2852510	1.00[ASN][1000 genomes]
rs2852512	0.85[CEU][hapmap]
rs2852513	1.00[ASN][1000 genomes]
rs2852514	1.00[ASN][1000 genomes]
rs364659	0.82[EUR][1000 genomes]
rs4240592	1.00[ASN][1000 genomes]
rs4429955	1.00[ASN][1000 genomes]
rs4455678	1.00[ASN][1000 genomes]
rs4615398	1.00[ASN][1000 genomes]
rs496596	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs503387	1.00[ASN][1000 genomes]
rs570556	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632956	1.00[ASN][1000 genomes]
rs643101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs658318	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659271	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs661064	1.00[ASN][1000 genomes]
rs687497	1.00[ASN][1000 genomes]
rs697438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72958632	1.00[ASN][1000 genomes]
rs7740295	1.00[ASN][1000 genomes]
rs9390724	1.00[ASN][1000 genomes]
rs9498487	1.00[ASN][1000 genomes]
rs9498519	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101728800-101729800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:101729200-101729800	Enhancers	HMEC	breast
3	chr6:101729200-101731000	Weak transcription	Fetal Intestine Small	intestine

Quick Search: