Variant report

Variant	rs627329
Chromosome Location	chr11:71807088-71807089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10128658	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10736786	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10751190	0.85[EUR][1000 genomes]
rs10751193	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793016	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10898814	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11235440	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12272213	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12283462	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12293885	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1541306	0.83[EUR][1000 genomes]
rs1573500	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1573502	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17161966	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17161980	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17161991	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1791544	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1806778	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1892919	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1892921	0.85[EUR][1000 genomes]
rs1894003	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1939242	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1939243	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1939245	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1939247	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2250866	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2298456	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2511074	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2511075	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2511076	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2511078	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2511079	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2511114	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2511116	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511121	0.83[ASN][1000 genomes]
rs2511122	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2845857	0.90[EUR][1000 genomes]
rs28504107	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3018301	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3018304	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3018308	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3133230	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3133233	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3750908	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3793938	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3814721	0.85[EUR][1000 genomes]
rs3886589	0.81[EUR][1000 genomes]
rs4121395	0.81[EUR][1000 genomes]
rs4338555	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4479013	0.81[EUR][1000 genomes]
rs482013	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs493065	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943821	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4944242	0.81[EUR][1000 genomes]
rs4944258	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4944259	0.84[ASN][1000 genomes]
rs4945426	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4945434	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945435	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs495567	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs510925	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs517837	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs541022	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs542752	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs547208	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs548961	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs552966	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs560777	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56097487	0.83[EUR][1000 genomes]
rs57025151	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs585228	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58991229	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs597513	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs598835	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs607446	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs610004	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs610041	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs636946	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs642573	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs642618	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs656640	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592448	0.81[EUR][1000 genomes]
rs6592449	0.81[EUR][1000 genomes]
rs6592451	0.81[EUR][1000 genomes]
rs6592453	0.85[EUR][1000 genomes]
rs6592455	0.85[EUR][1000 genomes]
rs6592458	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6592459	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs659513	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs670802	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671681	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs673478	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675185	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs676721	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs677279	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs678193	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs679926	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7101701	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7113549	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7116188	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7116495	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7121260	0.85[EUR][1000 genomes]
rs7123102	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7124000	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7126838	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7127865	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7128317	0.85[EUR][1000 genomes]
rs7128974	0.85[EUR][1000 genomes]
rs73531952	0.85[EUR][1000 genomes]
rs73539529	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73539532	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73543609	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73543633	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7480015	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7924516	0.81[EUR][1000 genomes]
rs7930142	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7930544	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7930721	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7930722	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7937515	0.86[ASN][1000 genomes]
rs7937582	0.85[ASN][1000 genomes]
rs7949480	0.85[EUR][1000 genomes]
rs947932	0.81[EUR][1000 genomes]
rs949325	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71792600-71808800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:71792600-71809000	Weak transcription	Psoas Muscle	Psoas
3	chr11:71792600-71812800	Weak transcription	Fetal Heart	heart
4	chr11:71792600-71813200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:71792800-71808200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:71792800-71808200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr11:71793000-71808400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:71793200-71808400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:71796400-71807600	Weak transcription	HMEC	breast
10	chr11:71797400-71808000	Weak transcription	Fetal Kidney	kidney
11	chr11:71798000-71812200	Weak transcription	Fetal Brain Male	brain
12	chr11:71800400-71812000	Strong transcription	Primary T cells from cord blood	blood
13	chr11:71802800-71808000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr11:71802800-71808000	Weak transcription	Small Intestine	intestine
15	chr11:71802800-71808200	Weak transcription	HepG2	liver
16	chr11:71802800-71809200	Weak transcription	HUVEC	blood vessel
17	chr11:71802800-71810000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:71803000-71810800	Strong transcription	Fetal Muscle Leg	muscle
19	chr11:71803400-71808000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:71803600-71808400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:71803600-71810200	Strong transcription	Stomach Smooth Muscle	stomach
22	chr11:71803800-71809400	Strong transcription	Placenta	Placenta
23	chr11:71803800-71809800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:71803800-71810800	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr11:71803800-71811200	Strong transcription	Brain Angular Gyrus	brain
26	chr11:71804000-71812800	Strong transcription	Fetal Stomach	stomach
27	chr11:71804200-71810000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr11:71804200-71810200	Strong transcription	Fetal Muscle Trunk	muscle
29	chr11:71804200-71810400	Strong transcription	Adipose Nuclei	Adipose
30	chr11:71804200-71810400	Strong transcription	Brain Hippocampus Middle	brain
31	chr11:71804200-71810600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:71804200-71811200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:71804200-71811600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:71804200-71811600	Strong transcription	Gastric	stomach
35	chr11:71804200-71811800	Strong transcription	Brain Inferior Temporal Lobe	brain
36	chr11:71804200-71812200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:71804200-71812200	Strong transcription	Fetal Intestine Large	intestine
38	chr11:71804400-71808800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:71804400-71809600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr11:71804400-71810400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:71804400-71810400	Strong transcription	Fetal Thymus	thymus
42	chr11:71804400-71810600	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr11:71804400-71810600	Strong transcription	Liver	Liver
44	chr11:71804400-71811000	Strong transcription	Primary B cells from peripheral blood	blood
45	chr11:71804400-71811000	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr11:71804400-71811200	Strong transcription	Duodenum Mucosa	Duodenum
47	chr11:71804400-71811200	Strong transcription	Fetal Intestine Small	intestine
48	chr11:71804400-71811200	Strong transcription	Osteobl	bone
49	chr11:71804400-71811400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr11:71804400-71811400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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