Variant report
Variant | rs627525 |
---|---|
Chromosome Location | chr1:194048799-194048800 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10157295 | 0.82[EUR][1000 genomes] |
rs10733081 | 0.81[EUR][1000 genomes] |
rs10921491 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs12124021 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs1372643 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs2584257 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2895663 | 0.97[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs480434 | 0.82[ASN][1000 genomes] |
rs509469 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs511374 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs524329 | 0.87[ASN][1000 genomes] |
rs533405 | 0.83[ASN][1000 genomes] |
rs534209 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs624023 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs628563 | 0.83[ASN][1000 genomes] |
rs630779 | 0.83[ASN][1000 genomes] |
rs632432 | 0.83[ASN][1000 genomes] |
rs634899 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs637225 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs643114 | 0.83[ASN][1000 genomes] |
rs651794 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs665903 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs6672135 | 0.80[EUR][1000 genomes] |
rs685287 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs72745140 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs7417488 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs9783003 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs9943099 | 0.81[EUR][1000 genomes] |
rs9943193 | 0.96[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs9943194 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1008266 | chr1:193550185-194481053 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv872834 | chr1:193889533-194482304 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv872835 | chr1:194014041-194051568 | Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
4 | nsv1001872 | chr1:194030479-194288016 | Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv872836 | chr1:194032486-194130204 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:194043800-194054000 | Weak transcription | Fetal Heart | heart |