Variant report

Variant	rs631853
Chromosome Location	chr11:59944898-59944899
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs107903	0.82[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10897011	0.84[EUR][1000 genomes]
rs11230180	0.84[EUR][1000 genomes]
rs11605427	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs12453	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs1303615	0.93[CEU][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs1303621	0.93[CEU][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.85[EUR][1000 genomes]
rs1441586	0.93[CEU][hapmap];0.89[JPT][hapmap]
rs17602572	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs1820430	0.84[EUR][1000 genomes]
rs1834549	0.84[EUR][1000 genomes]
rs1834550	0.84[EUR][1000 genomes]
rs1834551	0.84[EUR][1000 genomes]
rs1834557	0.83[EUR][1000 genomes]
rs2081545	0.84[EUR][1000 genomes]
rs2278867	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs2847663	0.82[CEU][hapmap]
rs476722	0.82[CEU][hapmap];0.89[JPT][hapmap]
rs483629	0.85[EUR][1000 genomes]
rs487997	0.80[EUR][1000 genomes]
rs502419	0.82[CEU][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes]
rs502581	0.93[CEU][hapmap];0.89[JPT][hapmap]
rs504272	0.85[EUR][1000 genomes]
rs510518	0.85[EUR][1000 genomes]
rs512495	0.82[EUR][1000 genomes]
rs514266	0.84[EUR][1000 genomes]
rs516478	0.89[CEU][hapmap];0.89[JPT][hapmap]
rs521952	0.82[CEU][hapmap];0.90[JPT][hapmap]
rs525794	0.93[CEU][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs534273	0.85[EUR][1000 genomes]
rs540170	0.93[CEU][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs555635	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs556917	0.82[CEU][hapmap];0.90[JPT][hapmap]
rs56201148	0.84[EUR][1000 genomes]
rs563803	0.84[EUR][1000 genomes]
rs564912	0.85[EUR][1000 genomes]
rs569046	0.81[CEU][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes]
rs574695	0.93[CEU][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs574704	0.81[CEU][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes]
rs574798	0.84[EUR][1000 genomes]
rs580064	0.82[CEU][hapmap]
rs580817	0.80[EUR][1000 genomes]
rs581133	0.93[CEU][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs583296	0.93[CEU][hapmap];0.89[JPT][hapmap]
rs583791	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs595481	0.81[CEU][hapmap]
rs602396	0.82[CEU][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs606588	0.92[CEU][hapmap];0.88[JPT][hapmap]
rs610932	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs617135	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs617916	0.81[CEU][hapmap];0.89[JPT][hapmap]
rs624663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632185	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs634475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636147	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs652354	0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs662196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs667897	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs684961	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs688030	0.81[CEU][hapmap];0.89[JPT][hapmap]
rs72918674	0.87[EUR][1000 genomes]
rs7926344	0.82[EUR][1000 genomes]
rs7926354	0.82[EUR][1000 genomes]
rs7926729	0.82[EUR][1000 genomes]
rs7926954	0.83[EUR][1000 genomes]
rs7933202	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs7935829	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs7946992	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33843	chr11:59908131-59945334	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv524137	chr11:59936979-59947252	Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59935800-59947200	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:59937200-59946600	Genic enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:59937200-59949800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:59938400-59946600	Weak transcription	Primary B cells from cord blood	blood
5	chr11:59942200-59947000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:59942600-59949200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:59943600-59948600	Weak transcription	Liver	Liver
8	chr11:59943800-59946800	Weak transcription	Adipose Nuclei	Adipose
9	chr11:59943800-59947600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr11:59944000-59950400	Weak transcription	GM12878-XiMat	blood
11	chr11:59944400-59949200	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood

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