Variant report

Variant	rs632422
Chromosome Location	chr6:81215558-81215559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10943716	0.89[EUR][1000 genomes]
rs10943717	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs10943718	0.86[EUR][1000 genomes]
rs12200933	0.88[EUR][1000 genomes]
rs13212000	0.83[EUR][1000 genomes]
rs1657308	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1698340	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2168104	0.85[EUR][1000 genomes]
rs2322840	0.88[EUR][1000 genomes]
rs2322841	0.88[EUR][1000 genomes]
rs2503719	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2917599	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2917601	0.88[EUR][1000 genomes]
rs4455626	0.91[EUR][1000 genomes]
rs4481396	0.89[EUR][1000 genomes]
rs4612123	0.89[EUR][1000 genomes]
rs484019	0.89[EUR][1000 genomes]
rs486831	0.80[CHD][hapmap];0.82[JPT][hapmap]
rs504505	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs565531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs585401	0.89[EUR][1000 genomes]
rs591403	0.91[EUR][1000 genomes]
rs600262	0.91[EUR][1000 genomes]
rs607208	0.89[EUR][1000 genomes]
rs630692	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs643557	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs652200	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs668698	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs676224	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs682310	0.81[EUR][1000 genomes]
rs7738465	0.90[EUR][1000 genomes]
rs9443791	0.91[EUR][1000 genomes]
rs9443797	0.88[EUR][1000 genomes]
rs9449027	0.83[EUR][1000 genomes]
rs9449059	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9449060	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9449061	0.89[EUR][1000 genomes]
rs9449063	0.89[EUR][1000 genomes]
rs9449067	0.89[EUR][1000 genomes]
rs9449068	0.89[EUR][1000 genomes]
rs9449074	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1019932	chr6:81155458-81217868	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv886311	chr6:81166178-81239971	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv886313	chr6:81177227-81239971	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81208000-81222600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:81215400-81216200	Enhancers	HepG2	liver

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