Variant report

Variant	rs635376
Chromosome Location	chr9:15289347-15289348
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:15283042..15284645-chr9:15287369..15289731,2	K562	blood:
2	chr9:15285917..15290029-chr9:15305142..15308889,4	MCF-7	breast:
3	chr9:15218010..15219971-chr9:15288500..15290967,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155158	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1001829	0.93[CHB][hapmap];0.93[ASN][1000 genomes]
rs10738391	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs10810368	1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs10810372	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10961959	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10961962	0.84[CEU][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11794919	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4741483	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs570474	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs571888	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs6474902	0.86[EUR][1000 genomes]
rs9657569	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2761505	chr9:15274373-15319613	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2762797	chr9:15282415-15297028	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv892624	chr9:15283761-15415461	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv517975	chr9:15286446-15534070	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv969751	chr9:15287487-15294727	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15243000-15293400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr9:15254000-15293000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:15254200-15293000	Weak transcription	NHEK	skin
4	chr9:15254200-15295600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:15259200-15293400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr9:15273600-15293400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr9:15277000-15292200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:15277000-15293000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:15277600-15296800	Weak transcription	Gastric	stomach
10	chr9:15278000-15295200	Weak transcription	Pancreas	Pancrea
11	chr9:15278200-15289400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:15278600-15291200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:15279800-15293200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:15283600-15293800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr9:15285200-15293800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:15286400-15289400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr9:15286800-15289600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr9:15286800-15293200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr9:15286800-15293800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr9:15287000-15293600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr9:15287000-15294200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr9:15287400-15289400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr9:15287400-15303600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:15287600-15290400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:15287600-15290600	Weak transcription	Stomach Mucosa	stomach
26	chr9:15287600-15291800	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr9:15287600-15292800	Weak transcription	Primary T cells from cord blood	blood
28	chr9:15287600-15293000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr9:15287600-15293000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr9:15287600-15293600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr9:15287600-15294000	Weak transcription	Small Intestine	intestine
32	chr9:15288400-15290000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:15288600-15289800	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr9:15288600-15293400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr9:15288600-15293400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:15288600-15294200	Weak transcription	HepG2	liver
37	chr9:15288800-15289400	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr9:15288800-15293800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr9:15288800-15293800	Weak transcription	Fetal Lung	lung
40	chr9:15288800-15294800	Weak transcription	Lung	lung
41	chr9:15289000-15289400	Weak transcription	Fetal Intestine Large	intestine
42	chr9:15289000-15289400	Weak transcription	Fetal Intestine Small	intestine
43	chr9:15289000-15289400	Weak transcription	Fetal Stomach	stomach
44	chr9:15289000-15289800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr9:15289000-15290600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr9:15289000-15291200	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr9:15289000-15293200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr9:15289000-15293400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr9:15289200-15291200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr9:15289200-15292000	Weak transcription	Primary T helper cells fromperipheralblood	blood

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