Variant report

Variant	rs636147
Chromosome Location	chr11:59957092-59957093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs107903	0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10897011	0.87[EUR][1000 genomes]
rs11230180	0.87[EUR][1000 genomes]
rs11605427	0.80[EUR][1000 genomes]
rs12453	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs1303615	0.89[CEU][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes]
rs1303621	0.89[CEU][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs1441586	0.89[CEU][hapmap];0.89[JPT][hapmap]
rs17602572	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs1820430	0.87[EUR][1000 genomes]
rs1834549	0.87[EUR][1000 genomes]
rs1834550	0.87[EUR][1000 genomes]
rs1834551	0.87[EUR][1000 genomes]
rs1834557	0.86[EUR][1000 genomes]
rs2081545	0.87[EUR][1000 genomes]
rs2278867	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs476722	0.89[JPT][hapmap]
rs483629	0.82[EUR][1000 genomes]
rs502419	0.90[JPT][hapmap]
rs502581	0.89[CEU][hapmap];0.89[JPT][hapmap]
rs504272	0.82[EUR][1000 genomes]
rs510518	0.82[EUR][1000 genomes]
rs514266	0.81[EUR][1000 genomes]
rs516478	0.85[CEU][hapmap];0.89[JPT][hapmap]
rs521952	0.90[JPT][hapmap]
rs525794	0.89[CEU][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs534273	0.82[EUR][1000 genomes]
rs540170	0.89[CEU][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs556917	0.90[JPT][hapmap]
rs56201148	0.87[EUR][1000 genomes]
rs563803	0.81[EUR][1000 genomes]
rs564912	0.82[EUR][1000 genomes]
rs569046	0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs574695	0.89[CEU][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs574704	0.89[JPT][hapmap]
rs574798	0.81[EUR][1000 genomes]
rs581133	0.89[CEU][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs583296	0.89[CEU][hapmap];0.89[JPT][hapmap]
rs583791	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs602396	0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs606588	0.87[CEU][hapmap];0.88[JPT][hapmap]
rs610932	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs617135	0.81[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs617916	0.89[JPT][hapmap]
rs624663	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs631853	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs632185	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs634475	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs652354	0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs662196	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs667897	0.81[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs684961	1.00[JPT][hapmap]
rs688030	0.89[JPT][hapmap]
rs72918674	0.84[EUR][1000 genomes]
rs7926344	0.85[EUR][1000 genomes]
rs7926354	0.85[EUR][1000 genomes]
rs7926729	0.85[EUR][1000 genomes]
rs7926954	0.80[EUR][1000 genomes]
rs7933202	0.86[CEU][hapmap]
rs7935829	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs7946992	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59950800-59961200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:59951600-59957400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:59954600-59957200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr11:59954600-59961000	Weak transcription	Fetal Intestine Large	intestine
5	chr11:59956000-59957200	Enhancers	Primary B cells from peripheral blood	blood
6	chr11:59956400-59960200	Weak transcription	Dnd41	blood

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