Variant report

Variant	rs637081
Chromosome Location	chr1:58631192-58631193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10493243	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12021839	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs12022240	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12025951	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12036406	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12037550	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12037749	0.81[ASN][1000 genomes]
rs12040992	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12042296	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12042368	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12043154	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12045007	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12046343	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12046993	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12049240	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17117004	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17117046	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039733	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095817	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2797610	1.00[MEX][hapmap]
rs2806398	1.00[AMR][1000 genomes]
rs4912182	0.89[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4912308	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59962900	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60227124	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60974573	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs627564	1.00[MEX][hapmap];0.85[MKK][hapmap]
rs647309	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1008968	chr1:58582159-58982440	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv534974	chr1:58582159-58982440	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58624600-58633800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:58624600-58634600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:58624800-58634200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:58626800-58640600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:58629000-58633600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:58629200-58634200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:58629200-58634200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:58629400-58633800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:58629600-58633600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr1:58629600-58634600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:58630600-58631200	Enhancers	GM12878-XiMat	blood
12	chr1:58630800-58631200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:58631000-58634600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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