Variant report

Variant	rs639015
Chromosome Location	chr11:75976301-75976302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75972394..75975476-chr11:75975785..75977497,3	K562	blood:
2	chr11:75960530..75963251-chr11:75974186..75976431,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2846072	0.80[ASN][1000 genomes]
rs595754	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs644408	0.82[EUR][1000 genomes]
rs653384	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs664675	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv897926	chr11:75862571-76004202	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1040118	chr11:75870189-75995089	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv1053129	chr11:75871240-75997663	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv897930	chr11:75960472-76027936	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3424209	chr11:75974329-75977077	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3444481	chr11:75974554-75976802	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3404033	chr11:75975004-75976302	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs639015	B3GNT6	cis	uninvolved skin	skin_eQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75962600-75983600	Weak transcription	Spleen	Spleen
2	chr11:75975000-75976800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:75975000-75979600	Weak transcription	Lung	lung
4	chr11:75975200-75977200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:75975600-75979200	Enhancers	Fetal Muscle Leg	muscle
6	chr11:75975800-75978400	Enhancers	Placenta	Placenta
7	chr11:75976000-75976400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:75976000-75976400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr11:75976000-75978200	Enhancers	Right Atrium	heart
10	chr11:75976000-75982600	Enhancers	Adipose Nuclei	Adipose
11	chr11:75976200-75976400	Bivalent Enhancer	Fetal Stomach	stomach
12	chr11:75976200-75976600	Flanking Active TSS	HSMMtube	muscle
13	chr11:75976200-75976800	Enhancers	Stomach Smooth Muscle	stomach
14	chr11:75976200-75977200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:75976200-75977800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr11:75976200-75978200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr11:75976200-75978600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr11:75976200-75978600	Flanking Active TSS	Hela-S3	cervix
19	chr11:75976200-75979000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr11:75976200-75979600	Enhancers	Fetal Lung	lung

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