Variant report

Variant	rs639419
Chromosome Location	chr11:56272098-56272099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10896227	0.83[ASN][1000 genomes]
rs10896325	0.86[ASN][1000 genomes]
rs10896345	0.86[ASN][1000 genomes]
rs11227964	0.83[ASN][1000 genomes]
rs12277883	0.86[ASN][1000 genomes]
rs12285921	0.83[ASN][1000 genomes]
rs12786642	0.91[ASN][1000 genomes]
rs1573512	0.86[ASN][1000 genomes]
rs1945228	0.86[ASN][1000 genomes]
rs2220001	0.83[ASN][1000 genomes]
rs34434887	0.86[ASN][1000 genomes]
rs4420287	0.86[ASN][1000 genomes]
rs4938829	0.91[ASN][1000 genomes]
rs4939037	0.86[ASN][1000 genomes]
rs4939054	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs594113	0.89[ASN][1000 genomes]
rs594568	0.92[ASN][1000 genomes]
rs597016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs597031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs597045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs597102	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs610822	0.89[ASN][1000 genomes]
rs612885	0.89[ASN][1000 genomes]
rs615231	0.89[ASN][1000 genomes]
rs621826	0.89[ASN][1000 genomes]
rs624412	0.89[ASN][1000 genomes]
rs634955	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs637202	0.89[ASN][1000 genomes]
rs647027	0.89[ASN][1000 genomes]
rs647058	0.89[ASN][1000 genomes]
rs647402	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs652537	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6591233	0.86[ASN][1000 genomes]
rs6591310	0.86[ASN][1000 genomes]
rs660788	0.89[ASN][1000 genomes]
rs663964	0.92[ASN][1000 genomes]
rs669453	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs672711	0.89[ASN][1000 genomes]
rs675120	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs675991	0.89[ASN][1000 genomes]
rs680490	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs683539	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7105808	0.86[ASN][1000 genomes]
rs7116573	0.86[ASN][1000 genomes]
rs7126732	0.86[ASN][1000 genomes]
rs7131637	0.84[ASN][1000 genomes]
rs7940239	0.86[ASN][1000 genomes]
rs871301	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	nsv1046487	chr11:56228761-56310644	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	esv3390825	chr11:56267582-56279687	Enhancers Weak transcription	TF binding region	2 gene(s)	inside rSNPs	diseases
6	esv3517447	chr11:56267639-56279771	Enhancers Weak transcription	TF binding region	2 gene(s)	inside rSNPs	diseases
7	esv3517448	chr11:56267639-56279771	Weak transcription Enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases
8	nsv975185	chr11:56268021-56280681	Enhancers Weak transcription	TF binding region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56271800-56273000	Weak transcription	Fetal Brain Male	brain

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