Variant report

Variant	rs6415281
Chromosome Location	chr7:48183725-48183726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10081256	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10215134	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10224302	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10224538	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10227666	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10227773	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10227781	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10244950	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10253481	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10257019	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10282492	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10951948	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10951949	0.85[ASN][1000 genomes]
rs10951950	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11771288	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11972396	0.89[ASN][1000 genomes]
rs12540937	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13228657	0.90[ASN][1000 genomes]
rs35739625	0.89[ASN][1000 genomes]
rs6463466	0.91[ASN][1000 genomes]
rs6463468	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6463469	0.90[ASN][1000 genomes]
rs6463470	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6463471	0.90[ASN][1000 genomes]
rs6945143	0.89[ASN][1000 genomes]
rs6949697	0.89[ASN][1000 genomes]
rs6950146	0.89[ASN][1000 genomes]
rs6950379	0.89[ASN][1000 genomes]
rs6950479	0.89[ASN][1000 genomes]
rs6962799	0.85[ASN][1000 genomes]
rs6968320	0.83[ASN][1000 genomes]
rs6968324	0.89[ASN][1000 genomes]
rs6968353	0.89[ASN][1000 genomes]
rs6968461	0.88[ASN][1000 genomes]
rs6969934	0.89[ASN][1000 genomes]
rs6970283	0.89[ASN][1000 genomes]
rs6971078	0.92[ASN][1000 genomes]
rs6972786	0.87[ASN][1000 genomes]
rs6972898	0.89[ASN][1000 genomes]
rs7384280	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7455086	0.90[ASN][1000 genomes]
rs7455481	0.89[ASN][1000 genomes]
rs7457043	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7457060	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7802128	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9639995	0.89[ASN][1000 genomes]
rs9639996	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9791970	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv532120	chr7:47882757-48195869	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv470221	chr7:47917495-48354363	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv464442	chr7:47917495-48354820	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv606893	chr7:47917495-48354820	Flanking Active TSS Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1027414	chr7:48117684-48438543	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv1033738	chr7:48143988-48349357	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48174400-48186600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:48179200-48184600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:48179200-48184600	Enhancers	Stomach Mucosa	stomach
4	chr7:48180000-48184000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:48180200-48186600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:48181200-48186400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:48182400-48186800	ZNF genes & repeats	Fetal Intestine Small	intestine
8	chr7:48182600-48185400	Weak transcription	Small Intestine	intestine
9	chr7:48183000-48184600	Enhancers	Fetal Intestine Large	intestine
10	chr7:48183200-48183800	Enhancers	Liver	Liver
11	chr7:48183200-48183800	Flanking Active TSS	Duodenum Mucosa	Duodenum
12	chr7:48183400-48183800	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr7:48183400-48184000	Flanking Active TSS	HepG2	liver
14	chr7:48183400-48184600	Enhancers	Pancreas	Pancrea
15	chr7:48183600-48184000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
16	chr7:48183600-48184000	Enhancers	A549	lung
17	chr7:48183600-48184600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr7:48183600-48186400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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