Variant report

Variant	rs641550
Chromosome Location	chr11:57021415-57021416
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12296071	1.00[AMR][1000 genomes]
rs1262323	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2508769	1.00[AMR][1000 genomes]
rs2508771	1.00[AMR][1000 genomes]
rs2846040	1.00[AMR][1000 genomes]
rs2846043	1.00[AMR][1000 genomes]
rs2846045	1.00[AMR][1000 genomes]
rs2846047	1.00[AMR][1000 genomes]
rs2846048	1.00[AMR][1000 genomes]
rs2851724	1.00[AMR][1000 genomes]
rs481516	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs501160	1.00[AMR][1000 genomes]
rs546403	1.00[AMR][1000 genomes]
rs559168	1.00[AMR][1000 genomes]
rs639248	1.00[AMR][1000 genomes]
rs652353	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57017200-57023200	Weak transcription	HSMMtube	muscle
2	chr11:57017200-57026000	Weak transcription	Fetal Brain Male	brain
3	chr11:57018200-57028800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:57019600-57021600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:57019600-57022200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:57019600-57022800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:57019600-57022800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:57020800-57022400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:57020800-57022600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:57020800-57022800	Weak transcription	HMEC	breast
11	chr11:57021000-57022600	Weak transcription	NHEK	skin
12	chr11:57021000-57023400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:57021200-57021600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:57021200-57023200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:57021400-57023400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links