Variant report

Variant	rs641829
Chromosome Location	chr11:59999075-59999076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10750930	0.90[JPT][hapmap]
rs1286182	0.90[JPT][hapmap]
rs1294440	0.91[JPT][hapmap]
rs1303617	0.90[JPT][hapmap]
rs1303620	0.90[JPT][hapmap]
rs1303622	0.90[JPT][hapmap]
rs1426252	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441585	0.90[JPT][hapmap]
rs2081546	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2194962	0.81[JPT][hapmap]
rs2243987	0.87[ASN][1000 genomes]
rs2433240	0.87[ASN][1000 genomes]
rs2847662	0.90[JPT][hapmap]
rs475812	0.90[JPT][hapmap]
rs485682	0.91[JPT][hapmap]
rs489297	0.90[JPT][hapmap]
rs512548	0.90[JPT][hapmap]
rs512555	0.90[JPT][hapmap]
rs519743	0.90[JPT][hapmap]
rs524995	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs535413	0.90[JPT][hapmap]
rs562442	0.90[JPT][hapmap]
rs569108	0.90[JPT][hapmap]
rs571582	0.91[JPT][hapmap]
rs574700	0.82[JPT][hapmap]
rs576295	0.91[JPT][hapmap]
rs576483	0.90[JPT][hapmap]
rs578269	0.83[JPT][hapmap]
rs581818	0.87[ASN][1000 genomes]
rs582407	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs585540	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs587634	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs588448	1.00[JPT][hapmap]
rs590351	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs590532	0.85[ASN][1000 genomes]
rs592496	0.87[ASN][1000 genomes]
rs594414	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595014	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs596788	0.87[ASN][1000 genomes]
rs598862	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs605820	0.85[ASN][1000 genomes]
rs607639	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs613548	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs613629	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615405	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620368	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs624233	0.87[ASN][1000 genomes]
rs625025	0.87[ASN][1000 genomes]
rs636988	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs638872	0.87[ASN][1000 genomes]
rs641051	0.87[ASN][1000 genomes]
rs642426	0.87[ASN][1000 genomes]
rs646924	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs649234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs650777	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs650853	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs650926	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs653285	0.87[ASN][1000 genomes]
rs654443	0.87[ASN][1000 genomes]
rs661376	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs662674	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs668095	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs668134	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs670925	0.87[ASN][1000 genomes]
rs672218	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs674971	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675316	0.86[ASN][1000 genomes]
rs675452	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs680699	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs682739	0.87[ASN][1000 genomes]
rs684977	0.87[ASN][1000 genomes]
rs7104122	0.81[JPT][hapmap]
rs73485360	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1053558	chr11:59979460-60061209	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59998400-60001800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr11:59998600-59999800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr11:59998600-60000600	Enhancers	Monocytes-CD14+_RO01746	blood

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