Variant report

Variant	rs641864
Chromosome Location	chr1:85897929-85897930
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10489511	1.00[YRI][hapmap]
rs10747319	1.00[YRI][hapmap]
rs11161608	1.00[YRI][hapmap]
rs1342324	0.89[AFR][1000 genomes]
rs233045	1.00[LWK][hapmap]
rs233048	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs233049	0.89[AFR][1000 genomes]
rs233056	0.84[AFR][1000 genomes]
rs233065	0.84[AFR][1000 genomes]
rs233073	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs233076	0.84[AFR][1000 genomes]
rs233082	0.89[AFR][1000 genomes]
rs233089	0.89[AFR][1000 genomes]
rs233092	0.89[AFR][1000 genomes]
rs233096	0.89[AFR][1000 genomes]
rs414484	0.84[AFR][1000 genomes]
rs6685360	1.00[AFR][1000 genomes]
rs684569	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7526667	1.00[YRI][hapmap]
rs7552422	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv830470	chr1:85820775-86014080	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs641864	GLUL	trans	lymphoblastoid	seeQTL

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85874000-85903800	Weak transcription	NHLF	lung
2	chr1:85874200-85903600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:85874400-85903600	Weak transcription	HepG2	liver
4	chr1:85874400-85904200	Weak transcription	NH-A	brain
5	chr1:85886400-85899000	Weak transcription	NHDF-Ad	bronchial
6	chr1:85886400-85903800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:85886400-85914200	Weak transcription	HSMMtube	muscle
8	chr1:85886800-85903800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:85887600-85902200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:85887600-85903400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:85890400-85902200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:85892200-85906200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:85893800-85906200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr1:85893800-85916800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:85894400-85903600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr1:85894600-85903600	Weak transcription	Adipose Nuclei	Adipose
17	chr1:85894600-85903800	Weak transcription	HUVEC	blood vessel
18	chr1:85894600-85904200	Weak transcription	Fetal Intestine Small	intestine
19	chr1:85896400-85899400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:85897000-85899200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:85897000-85899400	Strong transcription	HSMM	muscle
22	chr1:85897000-85904200	Weak transcription	Fetal Intestine Large	intestine
23	chr1:85897200-85898000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:85897200-85899200	Strong transcription	Osteobl	bone
25	chr1:85897400-85900400	Weak transcription	Fetal Brain Female	brain
26	chr1:85897800-85904200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:85897800-85904800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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