The 2.0 version of rSNPBase

Variant report

Variant rs6421169
Chromosome Location chr12:50952617-50952618
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:50920800-50962400 Weak transcription Stomach Smooth Muscle stomach
2 chr12:50927200-50957600 Weak transcription Fetal Lung lung
3 chr12:50927400-50961800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
4 chr12:50927600-50957200 Weak transcription Spleen Spleen
5 chr12:50927800-50961800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
6 chr12:50932000-50957800 Weak transcription Duodenum Smooth Muscle Duodenum
7 chr12:50932000-50958000 Weak transcription Adipose Nuclei Adipose
8 chr12:50932200-50961800 Weak transcription Right Ventricle heart
9 chr12:50936800-50962000 Weak transcription Primary T regulatory cells fromperipheralblood blood
10 chr12:50940000-50956400 Weak transcription Psoas Muscle Psoas
11 chr12:50940000-50961400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
12 chr12:50940400-50961800 Weak transcription Skeletal Muscle Female skeletal muscle
13 chr12:50940600-50955200 Weak transcription Primary T killer naive cells fromperipheralblood blood
14 chr12:50940800-50957000 Weak transcription Brain Inferior Temporal Lobe brain
15 chr12:50940800-50962000 Weak transcription HUES48 Cell Line embryonic stem cell
16 chr12:50941000-50957400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr12:50941000-50961800 Weak transcription Colon Smooth Muscle Colon
18 chr12:50941000-50962000 Weak transcription Brain Germinal Matrix brain
19 chr12:50941000-50963000 Weak transcription HSMMtube muscle
20 chr12:50941800-50957000 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr12:50943800-50956200 Weak transcription Colonic Mucosa Colon
22 chr12:50944400-50962000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
23 chr12:50944600-50961800 Weak transcription Small Intestine intestine
24 chr12:50944800-50953000 Weak transcription Primary neutrophils fromperipheralblood blood
25 chr12:50944800-50956200 Weak transcription Fetal Muscle Leg muscle
26 chr12:50944800-50956600 Weak transcription Rectal Mucosa Donor 29 rectum
27 chr12:50944800-50961800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr12:50945200-50965200 Weak transcription Fetal Muscle Trunk muscle
29 chr12:50945400-50961800 Weak transcription Esophagus oesophagus
30 chr12:50945600-50957000 Weak transcription Lung lung
31 chr12:50945600-50958800 Weak transcription Ovary ovary
32 chr12:50945800-50956800 Weak transcription GM12878-XiMat blood
33 chr12:50947200-50954200 Weak transcription Rectal Smooth Muscle rectum
34 chr12:50947200-50961800 Weak transcription HUES6 Cell Line embryonic stem cell
35 chr12:50947400-50958800 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr12:50947600-50957800 Weak transcription Breast Myoepithelial Primary Cells Breast
37 chr12:50948200-50952800 Weak transcription Primary monocytes fromperipheralblood blood
38 chr12:50948400-50966000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
39 chr12:50948800-50961400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr12:50949400-50961800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr12:50949400-50962000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
42 chr12:50949400-50962000 Weak transcription Primary T helper naive cells from peripheral blood blood
43 chr12:50949400-50973600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
44 chr12:50949600-50956000 Weak transcription Fetal Adrenal Gland Adrenal Gland
45 chr12:50949600-50958400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
46 chr12:50949800-50955200 Weak transcription Stomach Mucosa stomach
47 chr12:50949800-50955600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
48 chr12:50949800-50956600 Weak transcription Brain Substantia Nigra brain
49 chr12:50949800-50956800 Weak transcription Primary T helper naive cells fromperipheralblood blood
50 chr12:50949800-50957600 Weak transcription Pancreatic Islets Pancreatic Islet

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Last update: Aug 31, 2015