Variant report
| Variant | rs6424405 |
|---|---|
| Chromosome Location | chr1:71321026-71321027 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11804440 | 0.96[ASN][1000 genomes] |
| rs11805293 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs11807666 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs11808587 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs11808606 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs11809115 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs1327462 | 0.82[EUR][1000 genomes] |
| rs13306022 | 0.96[ASN][1000 genomes] |
| rs1409986 | 0.85[CEU][hapmap] |
| rs1576055 | 0.85[CEU][hapmap] |
| rs17131478 | 0.87[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs17131479 | 0.88[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs17131486 | 0.88[ASN][1000 genomes] |
| rs34247575 | 0.97[ASN][1000 genomes] |
| rs34580971 | 0.96[ASN][1000 genomes] |
| rs35284022 | 0.94[ASN][1000 genomes] |
| rs35327754 | 0.94[ASN][1000 genomes] |
| rs35946140 | 0.94[ASN][1000 genomes] |
| rs35952145 | 0.96[ASN][1000 genomes] |
| rs4650092 | 0.85[CEU][hapmap] |
| rs57313668 | 0.98[ASN][1000 genomes] |
| rs58239962 | 0.96[ASN][1000 genomes] |
| rs60466683 | 0.96[ASN][1000 genomes] |
| rs60994441 | 0.86[ASN][1000 genomes] |
| rs6424406 | 0.85[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs6667891 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs6669396 | 0.84[ASN][1000 genomes] |
| rs6683228 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs7515193 | 0.82[EUR][1000 genomes] |
| rs7525012 | 0.81[EUR][1000 genomes] |
| rs7541092 | 0.82[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs7551638 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1845198 | chr1:71274759-71514969 | Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv830148 | chr1:71310366-71483932 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
