Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10489276	0.94[EUR][1000 genomes]
rs10912488	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10912490	0.94[EUR][1000 genomes]
rs12021711	0.94[EUR][1000 genomes]
rs12037853	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12047983	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12136659	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12403628	0.90[EUR][1000 genomes]
rs12411259	0.91[EUR][1000 genomes]
rs12728265	0.85[EUR][1000 genomes]
rs12739009	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12748081	0.85[EUR][1000 genomes]
rs2157453	0.94[EUR][1000 genomes]
rs2157454	0.94[EUR][1000 genomes]
rs2187892	0.94[EUR][1000 genomes]
rs2213742	0.94[EUR][1000 genomes]
rs2213745	0.94[EUR][1000 genomes]
rs35715673	0.85[EUR][1000 genomes]
rs4916198	0.81[EUR][1000 genomes]
rs4916283	0.94[EUR][1000 genomes]
rs4916285	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55724017	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6425143	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6425146	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6661686	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6672776	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6699678	0.93[EUR][1000 genomes]
rs68143871	0.94[EUR][1000 genomes]
rs7517810	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7527462	0.94[EUR][1000 genomes]
rs9286879	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3587	chr1:172836950-172882218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172840600-172855200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:172843800-172844600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr1:172843800-172844600	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr1:172844000-172844600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:172844000-172844600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:172844000-172844600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:172844000-172844600	Enhancers	NHEK	skin
8	chr1:172844000-172844800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr1:172844000-172844800	Enhancers	HUVEC	blood vessel
10	chr1:172844200-172844600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:172844200-172844600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr1:172844200-172844800	Enhancers	HSMM	muscle

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