Variant report

Variant	rs6426073
Chromosome Location	chr1:225585811-225585812
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225581961..225584315-chr1:225585315..225587965,5	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10495240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10495241	0.83[CEU][hapmap];0.85[AMR][1000 genomes]
rs10753404	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10753405	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10799301	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10799303	0.94[AFR][1000 genomes]
rs10799304	0.94[AFR][1000 genomes]
rs10799307	0.85[AMR][1000 genomes]
rs10915817	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10915820	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10915822	0.89[AFR][1000 genomes]
rs10915823	0.86[AMR][1000 genomes]
rs11580119	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12028429	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs12073561	0.80[AMR][1000 genomes]
rs12134158	0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1538930	0.83[CEU][hapmap];0.85[AMR][1000 genomes]
rs1538933	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2282379	0.87[CEU][hapmap];0.88[JPT][hapmap]
rs2406109	0.87[ASN][1000 genomes]
rs3766928	0.87[CEU][hapmap];0.85[AMR][1000 genomes]
rs3856154	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs3856155	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3949347	0.95[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4529677	0.94[AFR][1000 genomes]
rs5015446	0.95[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6426069	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6426071	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6426072	0.89[ASN][1000 genomes]
rs6679430	0.82[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7539172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947035	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs947036	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs947037	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs950210	0.82[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225568200-225595800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:225570400-225587600	Weak transcription	Spleen	Spleen
3	chr1:225570800-225600000	Weak transcription	HSMMtube	muscle
4	chr1:225575600-225588200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr1:225576200-225594400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:225576400-225586000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr1:225576400-225586000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:225576600-225588600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:225578000-225588600	Weak transcription	Fetal Kidney	kidney
10	chr1:225578000-225597800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr1:225578000-225599200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:225578400-225588200	Weak transcription	Right Ventricle	heart
13	chr1:225578600-225588200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr1:225580800-225599200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr1:225581400-225592600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr1:225581600-225596200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr1:225581800-225590800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr1:225582000-225586000	Weak transcription	Ovary	ovary
19	chr1:225582000-225587800	Weak transcription	GM12878-XiMat	blood
20	chr1:225582000-225597800	Weak transcription	Brain Anterior Caudate	brain
21	chr1:225582200-225588000	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr1:225582200-225588200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr1:225582200-225588200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr1:225582200-225588600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr1:225582200-225591600	Weak transcription	Brain Angular Gyrus	brain
26	chr1:225582200-225591800	Weak transcription	Brain Hippocampus Middle	brain
27	chr1:225582200-225610400	Strong transcription	Fetal Thymus	thymus
28	chr1:225582400-225588600	Weak transcription	HepG2	liver
29	chr1:225582600-225588200	Weak transcription	NH-A	brain
30	chr1:225582600-225592400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:225582600-225597800	Weak transcription	Fetal Brain Male	brain
32	chr1:225582800-225586000	Weak transcription	Primary B cells from peripheral blood	blood
33	chr1:225583000-225587400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr1:225583200-225588200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr1:225583200-225594000	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr1:225583200-225597800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr1:225583400-225586400	Strong transcription	Colon Smooth Muscle	Colon
38	chr1:225583400-225588200	Weak transcription	Colonic Mucosa	Colon
39	chr1:225583400-225588800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr1:225583400-225589800	Strong transcription	Thymus	Thymus
41	chr1:225583400-225591400	Strong transcription	Stomach Smooth Muscle	stomach
42	chr1:225583400-225595400	Strong transcription	Fetal Brain Female	brain
43	chr1:225583400-225598000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr1:225583400-225601600	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr1:225583400-225601600	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr1:225583400-225601800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr1:225583600-225586400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr1:225583600-225588600	Weak transcription	Brain Substantia Nigra	brain
49	chr1:225583600-225597800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr1:225583600-225602200	Weak transcription	Placenta Amnion	Placenta Amnion

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