Variant report

Variant	rs6426163
Chromosome Location	chr1:225087609-225087610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225082757..225084326-chr1:225084761..225087654,2	K562	blood:

Variant related genes	Relation type
ENSG00000185842	Chromatin interaction

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10158926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10495228	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs10495229	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs1080260	0.85[ASN][1000 genomes]
rs1110378	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12561993	0.85[CHB][hapmap]
rs12563434	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12563857	0.82[CHB][hapmap]
rs12564683	0.82[CHB][hapmap];0.85[ASN][1000 genomes]
rs12565019	0.84[ASN][1000 genomes]
rs12565439	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs12566396	0.80[ASN][1000 genomes]
rs12566857	0.85[CHB][hapmap]
rs12566886	0.80[ASN][1000 genomes]
rs12567091	0.84[CHB][hapmap]
rs12567461	0.84[ASN][1000 genomes]
rs12567470	0.84[ASN][1000 genomes]
rs12567499	0.85[CHB][hapmap]
rs1482279	0.85[CHB][hapmap]
rs1482280	0.85[CHB][hapmap]
rs1506069	0.82[JPT][hapmap]
rs1506070	0.82[CHB][hapmap]
rs1506071	0.81[JPT][hapmap]
rs1506072	0.92[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1600865	0.96[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs16857787	0.84[ASN][1000 genomes]
rs16858145	0.84[ASN][1000 genomes]
rs16858216	0.84[ASN][1000 genomes]
rs16858299	0.85[ASN][1000 genomes]
rs16858661	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs16858758	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs16858766	0.80[ASN][1000 genomes]
rs16858829	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs16858831	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs16858932	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs16858962	0.85[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs1905114	0.85[CHB][hapmap]
rs1905115	0.83[CHB][hapmap]
rs1936629	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1936631	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1936635	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1961688	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs1982707	0.85[CHB][hapmap]
rs2014656	0.84[AMR][1000 genomes]
rs2101143	0.84[ASN][1000 genomes]
rs2128268	0.81[JPT][hapmap]
rs2128270	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs2254158	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2254406	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2291227	0.83[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs2406097	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2406098	0.84[ASN][1000 genomes]
rs2449256	0.82[JPT][hapmap]
rs2449259	0.82[CHB][hapmap]
rs2449266	0.81[AFR][1000 genomes]
rs2449269	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2449273	0.84[CHB][hapmap]
rs2449274	0.85[CHB][hapmap]
rs2449276	0.82[CHB][hapmap]
rs2449292	0.82[CHB][hapmap]
rs2449311	0.82[CHB][hapmap]
rs2449313	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs2449315	0.93[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2449316	0.80[ASN][1000 genomes]
rs2449320	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2456335	0.85[CHB][hapmap]
rs2456336	0.82[JPT][hapmap]
rs2456339	0.85[CHB][hapmap]
rs2456349	0.82[JPT][hapmap]
rs2489296	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2489300	0.80[ASN][1000 genomes]
rs2489303	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2489310	0.96[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2489311	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2489313	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2489314	0.84[AMR][1000 genomes]
rs2489322	0.85[CHB][hapmap]
rs2489324	0.92[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2489327	0.81[JPT][hapmap]
rs2489337	0.81[JPT][hapmap]
rs2489346	0.82[JPT][hapmap]
rs2489348	0.81[JPT][hapmap]
rs2489352	0.81[JPT][hapmap]
rs2489353	0.83[AMR][1000 genomes]
rs2501061	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs2501064	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs2501066	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs2501072	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs2501078	1.00[CHB][hapmap];0.84[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2501081	0.84[ASN][1000 genomes]
rs2501082	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2501083	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2501085	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2501087	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2501089	0.81[AFR][1000 genomes]
rs2501099	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2501120	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2501129	0.85[CHB][hapmap]
rs2501130	0.82[CHB][hapmap]
rs2501135	0.84[CHB][hapmap]
rs2501140	0.80[ASN][1000 genomes]
rs2501141	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs2501147	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2501151	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2501153	0.80[ASN][1000 genomes]
rs2501156	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs2939363	0.82[JPT][hapmap]
rs3101908	0.82[CHB][hapmap]
rs3128659	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs4379650	0.80[ASN][1000 genomes]
rs55668169	0.80[ASN][1000 genomes]
rs55754430	0.84[ASN][1000 genomes]
rs56088704	0.80[ASN][1000 genomes]
rs56152573	0.80[ASN][1000 genomes]
rs56203783	0.82[ASN][1000 genomes]
rs57137890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59420435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61466304	0.84[ASN][1000 genomes]
rs6697156	0.85[CHB][hapmap]
rs72629701	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72629702	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs729398	0.84[ASN][1000 genomes]
rs7523949	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs7531542	1.00[CHB][hapmap]

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Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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