Variant report

Variant	rs6427551
Chromosome Location	chr1:160851564-160851565
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:160850691..160852389-chr1:160852476..160855044,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179914	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10908808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10908809	0.82[EUR][1000 genomes]
rs10908810	0.80[EUR][1000 genomes]
rs11265504	0.83[EUR][1000 genomes]
rs11265510	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11265514	0.80[EUR][1000 genomes]
rs11578752	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12041508	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12409609	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12566557	0.81[EUR][1000 genomes]
rs1333062	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17387157	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1855187	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2039415	0.92[EUR][1000 genomes]
rs2151293	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2184067	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2184068	0.83[EUR][1000 genomes]
rs2184069	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2236515	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2274905	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274908	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274909	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2274910	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2297559	0.92[EUR][1000 genomes]
rs34067571	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766356	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766357	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3766359	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3818724	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3820094	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4017448	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4017458	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4017459	0.82[EUR][1000 genomes]
rs4017460	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4656944	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4656945	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4656949	0.83[EUR][1000 genomes]
rs4656950	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4656951	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4656953	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4656955	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4656956	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4656957	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4656958	0.92[EUR][1000 genomes]
rs4656959	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6427550	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6427552	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6427553	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6658416	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6667400	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6671490	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6676174	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6685693	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6691868	0.81[EUR][1000 genomes]
rs6694415	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6699162	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6699166	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6700146	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6703406	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6704490	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7411035	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7414728	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7414826	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7524351	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7532133	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551697	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs869167	0.83[EUR][1000 genomes]
rs869168	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs914793	0.82[EUR][1000 genomes]
rs952804	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs959047	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
4	nsv946457	chr1:160850522-160852172	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160846800-160854200	Weak transcription	Fetal Intestine Small	intestine
2	chr1:160847200-160852400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr1:160847600-160853800	Weak transcription	Spleen	Spleen
4	chr1:160849000-160852200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:160849200-160855400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:160849400-160854200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:160850600-160851800	Active TSS	Rectal Mucosa Donor 31	rectum
8	chr1:160851000-160855400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr1:160851200-160852800	Weak transcription	Rectal Mucosa Donor 29	rectum

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