Variant report

Variant	rs6432209
Chromosome Location	chr2:11642317-11642318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:11261906..11264371-chr2:11641389..11644333,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10169987	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10174895	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10192123	1.00[ASN][1000 genomes]
rs10201673	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10205078	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10929750	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11897533	1.00[ASN][1000 genomes]
rs12165170	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13383410	0.86[ASN][1000 genomes]
rs13388093	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13395155	0.86[ASN][1000 genomes]
rs13407457	0.86[ASN][1000 genomes]
rs13418262	0.86[ASN][1000 genomes]
rs13424905	0.86[ASN][1000 genomes]
rs13430148	0.86[ASN][1000 genomes]
rs16857565	0.86[ASN][1000 genomes]
rs2002730	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2043542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2082829	1.00[ASN][1000 genomes]
rs2082830	1.00[ASN][1000 genomes]
rs4668729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4669736	1.00[EUR][1000 genomes]
rs4669737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4669739	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4669740	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4669741	0.87[ASN][1000 genomes]
rs58651473	1.00[EUR][1000 genomes]
rs61362255	0.86[ASN][1000 genomes]
rs6713415	0.81[AFR][1000 genomes]
rs6719003	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6719009	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6739168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6741736	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756327	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187472	0.86[ASN][1000 genomes]
rs7566661	1.00[EUR][1000 genomes]
rs7597108	0.86[ASN][1000 genomes]
rs7597865	1.00[EUR][1000 genomes]
rs875231	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs877164	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11636400-11646400	Weak transcription	Right Atrium	heart
2	chr2:11638800-11646200	Weak transcription	Psoas Muscle	Psoas
3	chr2:11639600-11643000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:11639600-11643400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr2:11639600-11645400	Weak transcription	Pancreas	Pancrea
6	chr2:11639600-11646000	Weak transcription	Hela-S3	cervix
7	chr2:11639600-11646400	Weak transcription	Right Ventricle	heart
8	chr2:11639600-11647600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:11639600-11648200	Weak transcription	Stomach Mucosa	stomach
10	chr2:11639600-11655000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:11639800-11646200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr2:11640000-11643000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr2:11640000-11643000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:11640000-11643000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr2:11640000-11643200	Weak transcription	Brain Hippocampus Middle	brain
16	chr2:11640000-11646200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr2:11640000-11648000	Weak transcription	Fetal Heart	heart
18	chr2:11641200-11643000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr2:11641400-11642400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:11641400-11642800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr2:11641400-11643000	Weak transcription	K562	blood
22	chr2:11641400-11644400	Enhancers	Ovary	ovary
23	chr2:11641400-11645800	Enhancers	HepG2	liver
24	chr2:11641400-11647800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr2:11641400-11651600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr2:11641400-11653200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr2:11641600-11653800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr2:11641800-11647800	Weak transcription	Duodenum Mucosa	Duodenum

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