Variant report

Variant	rs6433879
Chromosome Location	chr2:181855462-181855463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:181854710..181856581-chr2:181858874..181861007,2	MCF-7	breast:
2	chr2:181843873..181847676-chr2:181852580..181857298,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170035	Chromatin interaction
ENSG00000236153	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10171108	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10171998	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10187842	0.83[CEU][hapmap];1.00[CHB][hapmap];0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10930948	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10930950	0.83[CEU][hapmap];1.00[CHB][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11692072	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12621277	0.88[CEU][hapmap];0.84[CHB][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12989967	1.00[CHB][hapmap]
rs13004683	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13004750	0.82[EUR][1000 genomes]
rs13019038	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13020845	0.82[CHB][hapmap]
rs13029368	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs1829365	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4346343	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4366861	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4510177	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4595925	0.83[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4667005	0.83[CEU][hapmap];0.84[CHB][hapmap];0.83[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4667008	0.83[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4990275	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6433878	0.83[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6433883	0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6704750	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6706565	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6731268	0.83[CEU][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6735373	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6743720	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6744130	0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6745190	1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7371639	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7559803	0.88[CEU][hapmap];0.84[CHB][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9808318	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181846400-181859200	Weak transcription	Esophagus	oesophagus
2	chr2:181846400-181868600	Weak transcription	Gastric	stomach
3	chr2:181846600-181872400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:181847000-181856400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:181847000-181857600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:181847000-181858800	Weak transcription	Colonic Mucosa	Colon
7	chr2:181847000-181859200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:181847000-181862400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:181847000-181862800	Weak transcription	Placenta	Placenta
10	chr2:181847000-181870000	Weak transcription	Pancreas	Pancrea
11	chr2:181847000-181873200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:181847200-181858800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr2:181847400-181870000	Weak transcription	Right Ventricle	heart
14	chr2:181847600-181864200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr2:181847600-181868400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr2:181848800-181856200	Weak transcription	Psoas Muscle	Psoas
17	chr2:181848800-181856400	Weak transcription	Ovary	ovary
18	chr2:181849000-181856200	Weak transcription	Aorta	Aorta
19	chr2:181849000-181856200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr2:181849000-181862000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr2:181849000-181872800	Weak transcription	Fetal Intestine Large	intestine
22	chr2:181849200-181855800	Weak transcription	Primary B cells from cord blood	blood
23	chr2:181849200-181860000	Weak transcription	Fetal Intestine Small	intestine
24	chr2:181849400-181880000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr2:181850000-181856200	Weak transcription	Fetal Stomach	stomach
26	chr2:181850000-181873000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr2:181850800-181857200	Weak transcription	Liver	Liver
28	chr2:181850800-181857200	Weak transcription	A549	lung
29	chr2:181850800-181869800	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr2:181851000-181855600	Weak transcription	Fetal Lung	lung
31	chr2:181851000-181856000	Weak transcription	HSMMtube	muscle
32	chr2:181851000-181856200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr2:181851000-181856600	Weak transcription	Brain Hippocampus Middle	brain
34	chr2:181851000-181857200	Weak transcription	Primary T cells from cord blood	blood
35	chr2:181851000-181859600	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr2:181851000-181859800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr2:181851000-181861200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr2:181851000-181866000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr2:181851000-181866200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr2:181851000-181866400	Weak transcription	Small Intestine	intestine
41	chr2:181851000-181870000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr2:181851000-181872200	Weak transcription	Left Ventricle	heart
43	chr2:181851200-181857800	Weak transcription	Fetal Brain Female	brain
44	chr2:181851200-181858000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr2:181851200-181859600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr2:181851200-181864000	Weak transcription	Brain Anterior Caudate	brain
47	chr2:181851200-181865600	Weak transcription	Fetal Brain Male	brain
48	chr2:181851200-181866600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr2:181851200-181876200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr2:181851400-181857200	Weak transcription	Colon Smooth Muscle	Colon

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