Variant report

Variant	rs6433890
Chromosome Location	chr2:181969380-181969381
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11902472	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431824	chr2:181946115-182118559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6433890	LOC729026	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181967800-181970800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:181968400-181969600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr2:181969000-181972400	Enhancers	Dnd41	blood
4	chr2:181969000-181974600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr2:181969200-181969800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:181969200-181969800	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr2:181969200-181970400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr2:181969200-181970800	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr2:181969200-181972000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr2:181969200-181972400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:181969200-181972600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr2:181969200-181973200	Enhancers	Primary T cells from cord blood	blood
13	chr2:181969200-181973200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr2:181969200-181973600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr2:181969200-181974200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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