Variant report

Variant	rs6435539
Chromosome Location	chr2:210655004-210655005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10170708	0.86[YRI][hapmap]
rs10175169	1.00[ASW][hapmap]
rs1558439	1.00[MEX][hapmap]
rs16843910	1.00[ASW][hapmap]
rs16843914	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs16843979	1.00[MEX][hapmap]
rs16843983	1.00[MEX][hapmap]
rs2191916	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2215626	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2887862	0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs41502644	1.00[MEX][hapmap]
rs6741657	1.00[MEX][hapmap]
rs6754623	1.00[ASW][hapmap]
rs6758085	1.00[MEX][hapmap]
rs7572221	1.00[MEX][hapmap]
rs7593770	1.00[MEX][hapmap]
rs7608699	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9808195	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210638200-210661400	Weak transcription	Fetal Brain Female	brain
2	chr2:210638400-210660000	Weak transcription	Fetal Brain Male	brain
3	chr2:210643800-210655800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:210644400-210655800	Weak transcription	Brain Germinal Matrix	brain
5	chr2:210646000-210656600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:210648600-210655800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr2:210651200-210662000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:210652200-210685000	Weak transcription	Brain Angular Gyrus	brain
9	chr2:210652400-210681000	Weak transcription	Brain Anterior Caudate	brain
10	chr2:210652800-210660200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:210654000-210655600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr2:210654400-210655400	Active TSS	Primary T killer memory cells from peripheral blood	blood
13	chr2:210654400-210655400	Active TSS	Duodenum Mucosa	Duodenum
14	chr2:210654600-210655200	Active TSS	Primary T cells fromperipheralblood	blood
15	chr2:210654600-210655200	Active TSS	Primary T helper naive cells from peripheral blood	blood
16	chr2:210654600-210655200	Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr2:210654600-210655200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
18	chr2:210654600-210655200	Active TSS	Primary T helper cells fromperipheralblood	blood
19	chr2:210654600-210655200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr2:210654600-210655200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
21	chr2:210654600-210655200	Active TSS	Adipose Nuclei	Adipose
22	chr2:210654600-210655200	Active TSS	Ovary	ovary
23	chr2:210654600-210655200	Active TSS	Psoas Muscle	Psoas
24	chr2:210654600-210655200	Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr2:210654600-210655200	Active TSS	Monocytes-CD14+_RO01746	blood
26	chr2:210654600-210655200	Active TSS	Osteobl	bone
27	chr2:210654600-210655400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr2:210654600-210655400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr2:210654600-210655400	Active TSS	Liver	Liver
30	chr2:210654600-210655400	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr2:210654600-210655400	Active TSS	Rectal Mucosa Donor 31	rectum
32	chr2:210654600-210655400	Active TSS	A549	lung
33	chr2:210654800-210655200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr2:210654800-210655200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
35	chr2:210654800-210655200	Active TSS	Muscle Satellite Cultured Cells	--
36	chr2:210654800-210655200	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr2:210654800-210655200	Active TSS	Hela-S3	cervix
38	chr2:210654800-210655200	Active TSS	HepG2	liver
39	chr2:210654800-210655200	Active TSS	NHLF	lung
40	chr2:210654800-210656400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr2:210654800-210656400	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr2:210654800-210656400	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr2:210655000-210655200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
44	chr2:210655000-210655400	Active TSS	Dnd41	blood

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