Variant report

Variant	rs6438312
Chromosome Location	chr3:116008353-116008354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:116003235..116005177-chr3:116007654..116010438,2	K562	blood:
2	chr3:116001314..116005313-chr3:116007754..116010441,4	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11918762	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13073491	1.00[ASW][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1563938	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16824799	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs1712999	1.00[CHD][hapmap]
rs17646052	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs17702596	1.00[CHB][hapmap]
rs17704285	1.00[CHD][hapmap]
rs34840522	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35300468	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35406989	0.91[ASN][1000 genomes]
rs35910525	0.98[ASN][1000 genomes]
rs4831093	1.00[CHB][hapmap]
rs55893774	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6775293	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6809953	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7611085	0.83[CHD][hapmap]
rs7639095	0.91[ASN][1000 genomes]
rs7639424	0.91[ASN][1000 genomes]
rs7645165	0.85[GIH][hapmap];0.89[LWK][hapmap];0.84[MKK][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs957783	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[YRI][hapmap]
rs9811136	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs9877364	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv3957	chr3:115986950-116032625	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115997200-116017200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:115999400-116014000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:116005200-116008400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:116006000-116008400	Enhancers	Fetal Brain Female	brain
5	chr3:116006000-116009200	Enhancers	Brain Germinal Matrix	brain
6	chr3:116006200-116009000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:116007400-116014400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr3:116007600-116009000	Enhancers	Colon Smooth Muscle	Colon
9	chr3:116007600-116013600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:116007600-116014200	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:116007600-116014400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr3:116007600-116016800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:116007800-116014200	Weak transcription	Brain Substantia Nigra	brain
14	chr3:116008200-116008800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:116008200-116009800	Weak transcription	Fetal Lung	lung

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