Variant report

Variant	rs6441976
Chromosome Location	chr3:46438012-46438013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46433060..46435170-chr3:46436766..46439385,2	K562	blood:
2	chr3:46435557..46438302-chr3:46445017..46447658,3	MCF-7	breast:
3	chr3:46436463..46438554-chr3:46441253..46442786,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs62242981	1.00[AFR][1000 genomes]
rs62244777	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6441993	1.00[AFR][1000 genomes]
rs7371865	1.00[AFR][1000 genomes]
rs7615975	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2756988	chr3:46419634-46444794	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759146	chr3:46419634-46444794	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv10267	chr3:46423130-46440713	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46422400-46438600	Weak transcription	Psoas Muscle	Psoas
2	chr3:46425400-46441800	Weak transcription	Stomach Mucosa	stomach
3	chr3:46425800-46446600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:46428000-46448400	Weak transcription	Primary T cells from cord blood	blood
5	chr3:46432400-46438200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:46434400-46438200	Enhancers	Adipose Nuclei	Adipose
7	chr3:46434600-46438600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr3:46435200-46439000	Enhancers	Spleen	Spleen
9	chr3:46435400-46440800	Weak transcription	Esophagus	oesophagus
10	chr3:46435600-46439200	Enhancers	Lung	lung
11	chr3:46435800-46438200	Weak transcription	Right Atrium	heart
12	chr3:46436000-46438400	Weak transcription	Left Ventricle	heart
13	chr3:46436400-46438800	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr3:46436600-46438600	Weak transcription	Pancreas	Pancrea
15	chr3:46436600-46439000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr3:46436600-46439200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr3:46436800-46438400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:46436800-46438400	Enhancers	Fetal Thymus	thymus
19	chr3:46436800-46438600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:46437000-46438400	Enhancers	Duodenum Mucosa	Duodenum
21	chr3:46437000-46438800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:46437000-46438800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:46437200-46438400	Enhancers	Primary B cells from cord blood	blood
24	chr3:46437200-46438400	Enhancers	Brain Anterior Caudate	brain
25	chr3:46437200-46438400	Enhancers	Dnd41	blood
26	chr3:46437200-46438600	Enhancers	Primary hematopoietic stem cells	blood
27	chr3:46437200-46438800	Enhancers	Primary B cells from peripheral blood	blood
28	chr3:46437200-46440400	Weak transcription	K562	blood
29	chr3:46437200-46446800	Weak transcription	Hela-S3	cervix
30	chr3:46437400-46438200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr3:46437400-46438600	Bivalent Enhancer	Placenta	Placenta
32	chr3:46437400-46438600	Enhancers	GM12878-XiMat	blood
33	chr3:46437400-46439200	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr3:46437400-46439200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr3:46437600-46445000	Weak transcription	Fetal Intestine Small	intestine
36	chr3:46437800-46438200	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr3:46437800-46441200	Weak transcription	HSMM	muscle
38	chr3:46438000-46438200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr3:46438000-46438200	Enhancers	Rectal Mucosa Donor 29	rectum
40	chr3:46438000-46438200	Enhancers	HSMMtube	muscle
41	chr3:46438000-46438400	Enhancers	Colonic Mucosa	Colon
42	chr3:46438000-46438400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links