Variant report

Variant	rs6441998
Chromosome Location	chr3:46509933-46509934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11716682	1.00[CHB][hapmap]
rs11919651	1.00[CHB][hapmap]
rs12639258	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13084167	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13327723	1.00[CHB][hapmap]
rs4637321	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6414427	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6414428	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6441999	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7374925	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7641783	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7644995	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014624	chr3:46463424-46549188	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1009892	chr3:46496775-46546918	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv536553	chr3:46496775-46546918	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46506800-46510800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr3:46507400-46522400	Weak transcription	Gastric	stomach
3	chr3:46507600-46514200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr3:46507800-46513400	Enhancers	Left Ventricle	heart
5	chr3:46508200-46511000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:46508200-46511400	Weak transcription	Lung	lung
7	chr3:46508600-46510200	Weak transcription	Primary B cells from cord blood	blood
8	chr3:46508600-46510800	Weak transcription	Pancreas	Pancrea
9	chr3:46509000-46510600	Weak transcription	Adipose Nuclei	Adipose
10	chr3:46509000-46511200	Weak transcription	Spleen	Spleen
11	chr3:46509200-46513400	Enhancers	Psoas Muscle	Psoas
12	chr3:46509400-46514000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr3:46509600-46511600	Enhancers	Fetal Muscle Leg	muscle
14	chr3:46509600-46511800	Enhancers	Right Atrium	heart
15	chr3:46509600-46512600	Enhancers	Right Ventricle	heart
16	chr3:46509800-46512000	Enhancers	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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