Variant report

Variant	rs6447612
Chromosome Location	chr4:48062130-48062131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12511511	0.97[ASN][1000 genomes]
rs13107767	0.81[ASN][1000 genomes]
rs1507925	0.97[ASN][1000 genomes]
rs2230594	0.99[ASN][1000 genomes]
rs28650378	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28667740	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs33964061	0.99[ASN][1000 genomes]
rs3805187	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4340770	0.81[ASN][1000 genomes]
rs6447610	0.94[ASN][1000 genomes]
rs6447611	0.94[ASN][1000 genomes]
rs6447613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6447614	0.99[ASN][1000 genomes]
rs6829490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6839501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs906487	0.80[ASN][1000 genomes]
rs9996535	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48061200-48075200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr4:48061400-48068200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:48061600-48068600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:48061800-48066400	Weak transcription	Primary T cells from cord blood	blood
5	chr4:48061800-48068400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:48062000-48065800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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