Variant report

Variant	rs6447615
Chromosome Location	chr4:48073937-48073938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:48069308..48072567-chr4:48073439..48077875,4	K562	blood:
2	chr4:48072329..48074417-chr4:48078865..48081474,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11942098	0.88[ASN][1000 genomes]
rs12646088	0.89[ASN][1000 genomes]
rs12647931	0.90[ASN][1000 genomes]
rs3805186	0.91[ASN][1000 genomes]
rs62301679	0.94[ASN][1000 genomes]
rs62301680	0.94[ASN][1000 genomes]
rs62301686	0.94[ASN][1000 genomes]
rs73244479	0.98[ASN][1000 genomes]
rs875179	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48061200-48075200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr4:48066800-48076400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr4:48067000-48082000	Strong transcription	Primary T cells from cord blood	blood
4	chr4:48067400-48078600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:48067600-48080400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr4:48067600-48081200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr4:48067600-48102400	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr4:48067800-48075200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr4:48067800-48081600	Strong transcription	Primary T helper cells PMA-I stimulated	--
10	chr4:48068000-48075400	Weak transcription	Thymus	Thymus
11	chr4:48068200-48075800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
12	chr4:48068600-48080000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr4:48068800-48074400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr4:48069600-48082600	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr4:48069800-48088000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:48070800-48105200	Weak transcription	GM12878-XiMat	blood
17	chr4:48072200-48075400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr4:48072400-48076000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:48073000-48075800	Enhancers	Stomach Mucosa	stomach
20	chr4:48073200-48074000	Enhancers	Hela-S3	cervix
21	chr4:48073200-48074600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr4:48073400-48074200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:48073800-48074400	Enhancers	Placenta	Placenta
24	chr4:48073800-48088000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr4:48073800-48088000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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