The 2.0 version of rSNPBase

Variant report

Variant rs6449529
Chromosome Location chr5:60643513-60643514
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:60631000-60644000 Weak transcription Primary hematopoietic stem cells blood
2 chr5:60631400-60652800 Weak transcription Primary B cells from cord blood blood
3 chr5:60632000-60648600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr5:60636200-60644400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr5:60637200-60644000 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr5:60637200-60645800 Weak transcription Stomach Mucosa stomach
7 chr5:60637200-60647600 Weak transcription Colonic Mucosa Colon
8 chr5:60637200-60651200 Enhancers Brain Anterior Caudate brain
9 chr5:60638000-60651200 Enhancers Brain Hippocampus Middle brain
10 chr5:60638200-60653000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
11 chr5:60638400-60646000 Weak transcription Primary T helper cells PMA-I stimulated --
12 chr5:60638400-60648600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr5:60638400-60650600 Enhancers Brain Substantia Nigra brain
14 chr5:60638400-60653000 Weak transcription NHEK skin
15 chr5:60638400-60655000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr5:60638400-60665200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr5:60638800-60650600 Enhancers Brain Angular Gyrus brain
18 chr5:60640400-60647800 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr5:60640400-60652800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr5:60640400-60665600 Weak transcription Gastric stomach
21 chr5:60640600-60644200 Weak transcription Fetal Intestine Large intestine
22 chr5:60640600-60644600 Weak transcription Duodenum Mucosa Duodenum
23 chr5:60640600-60645800 Weak transcription Right Ventricle heart
24 chr5:60640600-60647800 Weak transcription Aorta Aorta
25 chr5:60640600-60648600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
26 chr5:60640600-60658400 Weak transcription Fetal Brain Female brain
27 chr5:60640600-60658400 Weak transcription NHLF lung
28 chr5:60640800-60644200 Weak transcription Fetal Brain Male brain
29 chr5:60640800-60645800 Weak transcription HSMMtube muscle
30 chr5:60640800-60647800 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr5:60641000-60645800 Weak transcription Fetal Muscle Leg muscle
32 chr5:60641600-60644400 Weak transcription Colon Smooth Muscle Colon
33 chr5:60641600-60646000 Weak transcription Fetal Heart heart
34 chr5:60641600-60667400 Weak transcription Fetal Kidney kidney
35 chr5:60641800-60643600 Enhancers Rectal Smooth Muscle rectum
36 chr5:60641800-60644000 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr5:60642000-60644400 Enhancers Monocytes-CD14+_RO01746 blood
38 chr5:60642000-60645400 Enhancers Primary monocytes fromperipheralblood blood
39 chr5:60642400-60643600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr5:60642400-60646600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr5:60642400-60650000 Enhancers Brain Cingulate Gyrus brain
42 chr5:60642600-60645400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
43 chr5:60642600-60649800 Weak transcription ES-I3 Cell Line embryonic stem cell
44 chr5:60642800-60643600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr5:60642800-60644400 Weak transcription Cortex derived primary cultured neurospheres brain
46 chr5:60642800-60644600 Enhancers Primary neutrophils fromperipheralblood blood
47 chr5:60643000-60643600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
48 chr5:60643000-60643600 Enhancers Primary hematopoietic stem cells short term culture blood
49 chr5:60643000-60643600 Enhancers Brain Dorsolateral Prefrontal Cortex brain
50 chr5:60643000-60643600 Enhancers Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015