Variant report

Variant	rs645150
Chromosome Location	chr2:21010746-21010747
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:21010027..21012581-chr2:21013970..21016783,3	K562	blood:
2	chr2:21008823..21011692-chr2:21022218..21024231,2	K562	blood:
3	chr2:21010027..21013837-chr2:21015283..21019599,5	K562	blood:
4	chr2:21010574..21014630-chr2:21020251..21023943,4	K562	blood:
5	chr2:21009758..21012613-chr2:21016925..21018622,2	K562	blood:

Variant related genes	Relation type
ENSG00000118961	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12476001	0.81[EUR][1000 genomes]
rs16982026	0.92[YRI][hapmap];0.81[EUR][1000 genomes]
rs16988072	0.81[EUR][1000 genomes]
rs16988079	0.81[EUR][1000 genomes]
rs340601	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs340602	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs340603	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs340604	0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs340606	0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs340607	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs340615	0.87[AMR][1000 genomes]
rs472692	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs490710	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs492399	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4971527	0.81[EUR][1000 genomes]
rs4971529	0.81[EUR][1000 genomes]
rs514459	0.81[YRI][hapmap]
rs518968	0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs519025	0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs535022	0.92[YRI][hapmap]
rs575246	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57864736	0.87[AMR][1000 genomes]
rs597781	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs645100	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs649018	0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs666471	0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs685246	0.93[YRI][hapmap];0.81[EUR][1000 genomes]
rs7600933	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs839915	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20974600-21021800	Weak transcription	Thymus	Thymus
2	chr2:20994800-21021600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr2:20994800-21021600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr2:20994800-21021800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr2:20995000-21017600	Weak transcription	A549	lung
6	chr2:20995200-21021600	Weak transcription	K562	blood
7	chr2:20996600-21013200	Weak transcription	HSMMtube	muscle
8	chr2:20997400-21018600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:20997400-21021600	Weak transcription	Primary B cells from cord blood	blood
10	chr2:20998200-21021800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr2:21000200-21017600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:21000400-21021400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:21003600-21021600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr2:21004200-21018200	Weak transcription	HepG2	liver
15	chr2:21005400-21018400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr2:21006200-21021600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:21006400-21021600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr2:21010400-21021800	Weak transcription	Primary T cells from cord blood	blood
19	chr2:21010600-21010800	Enhancers	Gastric	stomach
20	chr2:21010600-21015000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr2:21010600-21021600	Weak transcription	Stomach Smooth Muscle	stomach

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