Variant report

Variant	rs6453102
Chromosome Location	chr5:74268327-74268328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10066902	0.88[EUR][1000 genomes]
rs10078075	0.89[EUR][1000 genomes]
rs10805892	0.94[EUR][1000 genomes]
rs10942726	0.92[ASN][1000 genomes]
rs3934476	0.82[EUR][1000 genomes]
rs4235682	0.89[EUR][1000 genomes]
rs4368710	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4413513	0.89[EUR][1000 genomes]
rs6453100	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6863602	0.88[EUR][1000 genomes]
rs6883719	0.89[EUR][1000 genomes]
rs6889166	0.89[ASN][1000 genomes]
rs6898812	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74253600-74269200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:74255000-74272600	Weak transcription	Gastric	stomach
3	chr5:74260800-74269000	Enhancers	Stomach Mucosa	stomach
4	chr5:74261400-74268600	Enhancers	Fetal Intestine Large	intestine
5	chr5:74261600-74268400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:74261800-74290400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:74262800-74270200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:74265800-74275000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:74267200-74268600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr5:74267200-74270000	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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