Variant report

Variant	rs6453218
Chromosome Location	chr5:75712103-75712104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62363214	0.89[EUR][1000 genomes]
rs62363252	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv882206	chr5:75676658-75746813	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75701000-75721600	Weak transcription	Fetal Stomach	stomach
2	chr5:75701600-75713000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:75703000-75731800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:75703200-75717800	Weak transcription	Small Intestine	intestine
5	chr5:75703400-75715600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:75703400-75718000	Weak transcription	Primary T cells from cord blood	blood
7	chr5:75703600-75747000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr5:75704600-75716800	Weak transcription	Fetal Intestine Small	intestine
9	chr5:75706000-75712200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:75706800-75718000	Weak transcription	Fetal Lung	lung
11	chr5:75707000-75727600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr5:75707800-75717600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:75707800-75718000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr5:75709600-75712200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr5:75709800-75712200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr5:75709800-75718000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr5:75709800-75727200	Weak transcription	Primary B cells from cord blood	blood
18	chr5:75710200-75715400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr5:75710200-75715800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr5:75710200-75717000	Weak transcription	Pancreas	Pancrea
21	chr5:75710200-75719000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr5:75710200-75720600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr5:75710200-75720800	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr5:75710600-75712600	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr5:75710600-75716600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr5:75710600-75718000	Weak transcription	Primary hematopoietic stem cells	blood
27	chr5:75710800-75717000	Weak transcription	Gastric	stomach
28	chr5:75710800-75719000	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr5:75711000-75712200	Weak transcription	Stomach Mucosa	stomach
30	chr5:75711000-75733600	Weak transcription	Thymus	Thymus
31	chr5:75711200-75715600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr5:75711400-75714800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr5:75711600-75712200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr5:75711600-75716800	Weak transcription	HepG2	liver
35	chr5:75712000-75712200	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr5:75712000-75712200	Enhancers	GM12878-XiMat	blood
37	chr5:75712000-75712400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr5:75712000-75716400	Weak transcription	Liver	Liver

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