Variant report

Variant	rs6455905
Chromosome Location	chr6:164000119-164000120
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:163832916..163835689-chr6:163998720..164000334,2	K562	blood:
2	chr6:163999887..164002454-chr6:164029460..164032387,2	K562	blood:
3	chr6:163982012..163984451-chr6:163998369..164000574,2	K562	blood:

Variant related genes	Relation type
ENSG00000270419	Chromatin interaction
ENSG00000112531	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10080505	0.94[EUR][1000 genomes]
rs11964059	0.82[MEX][hapmap]
rs12523713	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12523978	0.90[EUR][1000 genomes]
rs17176494	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs4112651	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs60332904	0.82[EUR][1000 genomes]
rs6901592	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs6902608	0.92[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs6906725	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs6910323	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs6914093	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs6917030	0.84[EUR][1000 genomes]
rs6928869	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs6936927	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs6937072	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs6937097	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs73013516	0.84[EUR][1000 genomes]
rs73013528	0.80[EUR][1000 genomes]
rs73013553	0.84[EUR][1000 genomes]
rs73015316	0.92[EUR][1000 genomes]
rs7759606	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs7761090	0.90[EUR][1000 genomes]
rs7770852	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs9456868	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458821	0.86[EUR][1000 genomes]
rs9458823	0.92[CEU][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs9458825	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs9458827	0.94[EUR][1000 genomes]
rs9458828	0.92[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs9458830	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs9458837	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458846	0.81[GIH][hapmap]
rs9458849	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9458854	0.81[GIH][hapmap]
rs9458855	0.81[GIH][hapmap]
rs9458857	1.00[EUR][1000 genomes]
rs9458859	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9654569	0.92[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163970800-164000200	Weak transcription	Right Atrium	heart
2	chr6:163985000-164006800	Weak transcription	Spleen	Spleen
3	chr6:163986600-164007000	Weak transcription	Aorta	Aorta
4	chr6:163987600-164007000	Weak transcription	Hela-S3	cervix
5	chr6:163987800-164000200	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:163991200-164001800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:163992000-164000600	Weak transcription	Fetal Kidney	kidney
8	chr6:163992200-164000200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:163992200-164000400	Weak transcription	Pancreas	Pancrea
10	chr6:163992200-164000600	Weak transcription	Fetal Stomach	stomach
11	chr6:163992200-164002000	Weak transcription	Ovary	ovary
12	chr6:163992200-164007200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:163992200-164007200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:163992200-164009000	Weak transcription	GM12878-XiMat	blood
15	chr6:163992400-164000200	Weak transcription	Esophagus	oesophagus
16	chr6:163992400-164001800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr6:163992400-164005800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:163992400-164007000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:163992400-164007800	Weak transcription	Lung	lung
20	chr6:163993200-164000200	Weak transcription	Primary B cells from cord blood	blood
21	chr6:163993200-164001200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:163993600-164000200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:163994000-164004800	Weak transcription	HepG2	liver
24	chr6:163994000-164007200	Weak transcription	NHLF	lung
25	chr6:163994200-164006400	Weak transcription	A549	lung
26	chr6:163994200-164006400	Weak transcription	HUVEC	blood vessel
27	chr6:163994400-164006600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr6:163995200-164007200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:163995400-164000200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr6:163995600-164000200	Weak transcription	HMEC	breast
31	chr6:163995600-164003400	Weak transcription	Psoas Muscle	Psoas
32	chr6:163995600-164006800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:163996000-164000400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:163996200-164000200	Weak transcription	Fetal Muscle Leg	muscle
35	chr6:163996200-164000400	Weak transcription	Osteobl	bone
36	chr6:163996200-164001000	Weak transcription	Fetal Lung	lung
37	chr6:163996200-164007000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:163996200-164007200	Weak transcription	NHDF-Ad	bronchial
39	chr6:163996600-164002000	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr6:163996800-164000600	Weak transcription	Adipose Nuclei	Adipose
41	chr6:163996800-164001200	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr6:163996800-164002200	Enhancers	Brain Anterior Caudate	brain
43	chr6:163997000-164000600	Weak transcription	Fetal Brain Male	brain
44	chr6:163997400-164000200	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:163997600-164000400	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr6:163997600-164006400	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr6:163997800-164000200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:163997800-164000200	Weak transcription	Placenta	Placenta
49	chr6:163997800-164000200	Weak transcription	Left Ventricle	heart
50	chr6:163998000-164000400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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