Variant report

Variant	rs6459143
Chromosome Location	chr6:56155058-56155059
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56106753..56107362-chr6:56154583..56155363,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs4075390	0.84[ASN][1000 genomes]
rs4128443	0.81[ASN][1000 genomes]
rs4302670	0.85[ASN][1000 genomes]
rs4348306	0.92[ASN][1000 genomes]
rs4401668	0.92[ASN][1000 genomes]
rs4432980	0.92[ASN][1000 genomes]
rs4455670	0.96[ASN][1000 genomes]
rs4596476	0.96[ASN][1000 genomes]
rs4602722	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4712129	0.85[ASN][1000 genomes]
rs4715608	0.96[ASN][1000 genomes]
rs4715615	0.85[ASN][1000 genomes]
rs6908492	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6916683	0.96[ASN][1000 genomes]
rs6918390	0.85[ASN][1000 genomes]
rs6918405	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6918460	0.85[ASN][1000 genomes]
rs6918489	0.85[ASN][1000 genomes]
rs6918786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6924236	0.80[ASN][1000 genomes]
rs6924834	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6925039	0.85[ASN][1000 genomes]
rs7748964	0.96[ASN][1000 genomes]
rs7755746	0.92[ASN][1000 genomes]
rs7766466	0.96[ASN][1000 genomes]
rs7766685	0.85[ASN][1000 genomes]
rs9349811	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9357903	0.92[ASN][1000 genomes]
rs9357904	0.92[ASN][1000 genomes]
rs9357905	0.92[ASN][1000 genomes]
rs9357908	0.85[ASN][1000 genomes]
rs9367680	0.92[ASN][1000 genomes]
rs9370507	0.96[ASN][1000 genomes]
rs9370508	0.92[ASN][1000 genomes]
rs9370509	0.92[ASN][1000 genomes]
rs9370510	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs9370520	0.85[ASN][1000 genomes]
rs9382616	0.85[ASN][1000 genomes]
rs9396195	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9396200	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9396201	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9475661	0.85[ASN][1000 genomes]
rs9689751	0.92[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6459143	COL21A1	cis	cerebellum	SCAN
rs6459143	HMGCLL1	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56143600-56156200	Weak transcription	Fetal Lung	lung
2	chr6:56143800-56156200	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:56153600-56156200	Weak transcription	A549	lung
4	chr6:56154200-56155200	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:56154400-56156000	Weak transcription	Fetal Heart	heart

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