Variant report
| Variant | rs646146 |
|---|---|
| Chromosome Location | chr11:56910972-56910973 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:56907060..56908951-chr11:56910842..56913533,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs11820215 | 0.88[ASW][hapmap];0.80[CEU][hapmap];0.82[CHB][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap] |
| rs2077190 | 0.88[ASW][hapmap];0.80[CEU][hapmap];0.82[CHB][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap] |
| rs4442567 | 0.80[ASN][1000 genomes] |
| rs480586 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs486524 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs489379 | 0.88[ASN][1000 genomes] |
| rs514354 | 0.83[ASN][1000 genomes] |
| rs542107 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs567766 | 0.88[ASW][hapmap];0.80[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap];0.83[ASN][1000 genomes] |
| rs609763 | 0.88[ASW][hapmap];0.80[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap];0.83[ASN][1000 genomes] |
| rs622932 | 0.80[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs648409 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs652068 | 0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.94[ASN][1000 genomes] |
| rs664437 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs948851 | 0.88[ASW][hapmap];0.80[CEU][hapmap];0.82[CHB][hapmap];0.90[MEX][hapmap];0.83[TSI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv915640 | chr11:56814841-57139786 | Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| 2 | nsv482317 | chr11:56857026-57028631 | Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs646146 | ZNF628 | trans | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:56909800-56913400 | Enhancers | K562 | blood |
