Variant report

Variant	rs6462895
Chromosome Location	chr7:39198960-39198961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39198600..39200599-chr7:39202951..39205373,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10229456	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10234092	0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10242528	0.83[CHD][hapmap];0.91[LWK][hapmap];0.93[YRI][hapmap]
rs10244776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10252129	0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[ASN][1000 genomes]
rs10951597	0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11773046	0.82[CHB][hapmap];0.96[CHD][hapmap];0.90[JPT][hapmap]
rs11972468	1.00[CEU][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs12531437	0.91[CEU][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12531464	0.91[CEU][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12534084	0.91[CEU][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12536501	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12701695	0.82[YRI][hapmap]
rs12701698	0.90[CHD][hapmap]
rs12701699	0.92[YRI][hapmap]
rs1525793	1.00[CEU][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.82[YRI][hapmap]
rs1525800	0.87[CHD][hapmap]
rs17511572	0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2049496	0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2091323	1.00[CEU][hapmap]
rs2280668	0.87[CHD][hapmap];0.93[YRI][hapmap]
rs2392619	0.83[EUR][1000 genomes]
rs28459466	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs35489214	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35792719	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3924710	0.91[CEU][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4262244	0.95[ASN][1000 genomes]
rs4279508	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4401749	0.91[CEU][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4472423	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4473925	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4720311	0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4720314	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4720315	0.91[CEU][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4723823	0.82[YRI][hapmap]
rs56395837	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59249283	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61003868	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6462894	0.84[YRI][hapmap]
rs6955619	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6955746	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6955924	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6975659	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73697515	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7783839	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7783932	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7784092	0.91[CEU][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7787466	0.91[CEU][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7787601	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7788521	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs7795617	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7802746	0.91[CEU][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7806520	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs955591	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887968	chr7:39123165-39198960	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830968	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv428163	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv2761126	chr7:39191290-39199053	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6462895	DPY19L2P1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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