Variant report

Variant	rs6462916
Chromosome Location	chr7:39444694-39444695
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10248165	0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10269183	0.82[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17619647	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs2024100	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs2074934	0.88[CEU][hapmap];0.90[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2237400	0.88[CEU][hapmap];0.90[CHB][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2237401	0.85[ASN][1000 genomes]
rs57694192	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7792157	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs917401	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv981456	chr7:39431071-39454006	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39436400-39445400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:39437600-39446000	Weak transcription	Pancreas	Pancrea
3	chr7:39440200-39446000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:39440800-39446000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:39441000-39446000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:39441000-39447200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:39441200-39446200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:39441400-39446600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:39441600-39445400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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