Variant report

Variant	rs6465859
Chromosome Location	chr7:102052684-102052685
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102051526..102054214-chr7:102072489..102075565,4	MCF-7	breast:
2	chr7:102043295..102047994-chr7:102049939..102056237,7	K562	blood:
3	chr7:102048214..102051308-chr7:102051433..102054788,6	K562	blood:
4	chr7:102052562..102053384-chr7:102090481..102090999,2	MCF-7	breast:
5	chr7:101926385..101929232-chr7:102051219..102053178,2	K562	blood:
6	chr7:102045609..102048565-chr7:102052252..102054307,2	MCF-7	breast:
7	chr7:102051596..102053121-chr7:102059807..102061560,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221510	Chromatin interaction
ENSG00000160999	Chromatin interaction
ENSG00000239480	Chromatin interaction
ENSG00000128563	Chromatin interaction
ENSG00000160991	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10225683	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10226565	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10233236	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10233461	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10235407	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10237343	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10239657	0.82[EUR][1000 genomes]
rs10243209	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10246324	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10249217	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10249222	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10249581	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10255036	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10268289	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10268970	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10276094	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10277996	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10278274	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11982980	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11983129	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12672132	0.81[EUR][1000 genomes]
rs17135197	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1983476	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1997164	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2103229	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2410990	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2411005	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28427402	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28539797	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28879187	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56295031	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6947435	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6951185	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6953087	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6958795	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6968325	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6970496	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6974177	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7384178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7385200	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7787493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1814780	chr7:101912320-102375950	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv1819566	chr7:101912320-102375950	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv1822347	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv1825708	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	esv1842898	chr7:101912320-102375950	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	esv1847418	chr7:101912320-102375950	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
7	nsv427798	chr7:101912320-102375950	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
8	nsv428182	chr7:101912320-102375950	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
9	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
10	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
11	nsv1029079	chr7:101939998-102112371	Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
12	esv1818954	chr7:101957513-102328097	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
13	esv1828190	chr7:101966669-102439077	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
14	esv1829377	chr7:101970299-102330884	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
15	nsv831083	chr7:101981005-102295869	Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
16	esv1806297	chr7:101981544-102330884	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
17	esv1810415	chr7:101993063-102375950	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
18	esv1811751	chr7:101993063-102375950	Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
19	esv1829118	chr7:101993063-102375950	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
20	esv1833155	chr7:101993063-102375950	Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6465859	ORAI2	cis	Whole Blood	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102038000-102066800	Weak transcription	Stomach Mucosa	stomach
2	chr7:102038400-102055600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:102038800-102053000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:102038800-102053000	Strong transcription	Thymus	Thymus
5	chr7:102038800-102054000	Strong transcription	Primary T cells from cord blood	blood
6	chr7:102038800-102068600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:102039000-102054000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:102039000-102055000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr7:102039000-102058000	Strong transcription	Osteobl	bone
10	chr7:102039000-102062400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:102039000-102062400	Strong transcription	Stomach Smooth Muscle	stomach
12	chr7:102039200-102053000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:102039200-102053200	Strong transcription	Duodenum Mucosa	Duodenum
14	chr7:102039200-102053800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:102039200-102057200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:102039200-102059200	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr7:102039200-102059800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr7:102039200-102062400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr7:102039200-102062600	Strong transcription	Dnd41	blood
20	chr7:102039200-102068200	Strong transcription	Placenta	Placenta
21	chr7:102039200-102070000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:102039400-102060200	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr7:102039400-102060600	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr7:102039400-102061000	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr7:102039400-102061600	Strong transcription	Fetal Intestine Large	intestine
26	chr7:102039400-102063000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:102039400-102063600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:102039600-102053200	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr7:102039600-102060000	Strong transcription	Fetal Lung	lung
30	chr7:102039600-102067800	Strong transcription	Liver	Liver
31	chr7:102039600-102068200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr7:102039800-102052800	Strong transcription	Skeletal Muscle Male	skeletal muscle
33	chr7:102039800-102065800	Strong transcription	Adipose Nuclei	Adipose
34	chr7:102039800-102068600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:102041200-102053200	Strong transcription	Spleen	Spleen
36	chr7:102041600-102054000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr7:102042200-102053800	Strong transcription	Ovary	ovary
38	chr7:102042600-102062400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr7:102043600-102056200	Strong transcription	Fetal Kidney	kidney
40	chr7:102044400-102056200	Strong transcription	K562	blood
41	chr7:102045000-102053000	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr7:102045000-102067800	Strong transcription	HepG2	liver
43	chr7:102045200-102052800	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr7:102045200-102052800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr7:102045400-102052800	Strong transcription	Fetal Thymus	thymus
46	chr7:102045400-102053800	Strong transcription	Placenta Amnion	Placenta Amnion
47	chr7:102046400-102054400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr7:102047000-102053800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr7:102048600-102060800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr7:102048800-102052800	Weak transcription	NHDF-Ad	bronchial

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