Variant report

Variant	rs6466076
Chromosome Location	chr7:105478527-105478528
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105467716..105469978-chr7:105478235..105481087,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6964480	1.00[YRI][hapmap]
rs7793664	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105430200-105479200	Weak transcription	Aorta	Aorta
2	chr7:105449000-105479200	Weak transcription	Esophagus	oesophagus
3	chr7:105465400-105506600	Weak transcription	Fetal Intestine Large	intestine
4	chr7:105468400-105478800	Weak transcription	Fetal Intestine Small	intestine
5	chr7:105469000-105479200	Weak transcription	Right Atrium	heart
6	chr7:105471600-105479200	Weak transcription	Fetal Thymus	thymus
7	chr7:105471600-105479800	Weak transcription	Gastric	stomach
8	chr7:105471800-105478800	Weak transcription	Ovary	ovary
9	chr7:105471800-105483600	Weak transcription	Pancreas	Pancrea
10	chr7:105471800-105484000	Weak transcription	Primary T cells from cord blood	blood
11	chr7:105472200-105478600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr7:105472400-105478800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:105472400-105479000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:105472400-105489800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr7:105472600-105479000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:105473000-105494400	Weak transcription	Fetal Lung	lung
17	chr7:105473200-105479000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:105473200-105490000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:105473400-105478600	Weak transcription	NHEK	skin
20	chr7:105473400-105484400	Weak transcription	Hela-S3	cervix
21	chr7:105473600-105478600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:105473600-105479200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr7:105473800-105479200	Weak transcription	A549	lung
24	chr7:105473800-105480400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr7:105473800-105481000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr7:105476200-105478800	Weak transcription	Fetal Stomach	stomach
27	chr7:105476800-105478600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr7:105477400-105480000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr7:105477600-105480800	Enhancers	Fetal Brain Male	brain
30	chr7:105477800-105478600	Enhancers	Colon Smooth Muscle	Colon
31	chr7:105477800-105479400	Enhancers	Adipose Nuclei	Adipose
32	chr7:105477800-105480000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:105478000-105478600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr7:105478000-105478600	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr7:105478000-105478600	Enhancers	NHLF	lung
36	chr7:105478000-105478800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr7:105478000-105478800	Flanking Active TSS	Brain Anterior Caudate	brain
38	chr7:105478000-105478800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
39	chr7:105478000-105479000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
40	chr7:105478000-105479000	Flanking Active TSS	Brain Hippocampus Middle	brain
41	chr7:105478000-105479200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr7:105478000-105479200	Flanking Active TSS	Brain Germinal Matrix	brain
43	chr7:105478000-105479200	Flanking Active TSS	Fetal Brain Female	brain
44	chr7:105478000-105479400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
45	chr7:105478000-105479400	Enhancers	Brain Angular Gyrus	brain
46	chr7:105478000-105479600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr7:105478000-105479600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr7:105478000-105479600	Flanking Active TSS	Stomach Smooth Muscle	stomach
49	chr7:105478000-105480000	Enhancers	Brain Substantia Nigra	brain
50	chr7:105478000-105480000	Enhancers	Fetal Heart	heart

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