Variant report

Variant	rs646636
Chromosome Location	chr6:150728187-150728188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs4870512	0.86[EUR][1000 genomes]
rs587968	0.92[EUR][1000 genomes]
rs603815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs618914	0.88[ASN][1000 genomes]
rs648460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs649677	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs649744	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs651465	0.92[EUR][1000 genomes]
rs653803	0.92[EUR][1000 genomes]
rs660484	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs665670	0.87[EUR][1000 genomes]
rs681442	0.92[EUR][1000 genomes]
rs682518	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs683826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs725904	0.87[EUR][1000 genomes]
rs9371441	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464078	chr6:150720439-150729878	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv604849	chr6:150720439-150729878	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1022455	chr6:150727247-150755933	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150721800-150729800	Weak transcription	Liver	Liver
2	chr6:150724800-150728600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:150724800-150730000	Weak transcription	Left Ventricle	heart
4	chr6:150724800-150731000	Weak transcription	Lung	lung
5	chr6:150725000-150730000	Weak transcription	HMEC	breast
6	chr6:150725400-150728200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:150725400-150728400	Weak transcription	Fetal Lung	lung
8	chr6:150725400-150730200	Weak transcription	Fetal Heart	heart
9	chr6:150725400-150730400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:150725400-150731000	Weak transcription	Right Ventricle	heart
11	chr6:150725400-150733000	Weak transcription	Stomach Mucosa	stomach
12	chr6:150725600-150730200	Weak transcription	Fetal Kidney	kidney
13	chr6:150725600-150730400	Weak transcription	Hela-S3	cervix
14	chr6:150725600-150730600	Weak transcription	NH-A	brain
15	chr6:150725600-150731200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:150727600-150734000	Enhancers	Osteobl	bone
17	chr6:150728000-150728200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr6:150728000-150728200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
19	chr6:150728000-150728800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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