Variant report

Variant	rs6467111
Chromosome Location	chr7:126724861-126724862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126714682..126717546-chr7:126724506..126726256,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10487470	1.00[JPT][hapmap]
rs17644601	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17862293	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17862309	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17863210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17863212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863237	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17864127	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs17864156	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17866036	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17866348	1.00[JPT][hapmap]
rs17867759	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17867764	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17867770	1.00[JPT][hapmap]
rs17867775	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17869212	1.00[JPT][hapmap]
rs17869630	1.00[JPT][hapmap]
rs1894730	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs2023641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237793	1.00[JPT][hapmap]
rs7794734	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs6467111	KLHDC10	cis	parietal	SCAN
rs6467111	MED26	trans	cerebellum	SCAN
rs6467111	SLC13A1	cis	cerebellum	SCAN
rs6467111	IQUB	cis	cerebellum	SCAN
rs6467111	CADPS2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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