Variant report

Variant	rs6467733
Chromosome Location	chr7:137749862-137749863
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10245239	0.83[MEX][hapmap]
rs1424379	0.83[AMR][1000 genomes]
rs1424380	0.80[AMR][1000 genomes]
rs6467735	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6956827	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6964970	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv831151	chr7:137711447-137865471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137749400-137750000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr7:137749400-137750200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:137749400-137750200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:137749400-137750200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:137749400-137752200	Enhancers	Fetal Intestine Small	intestine
6	chr7:137749600-137750000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:137749600-137750000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr7:137749600-137750000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:137749600-137750000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr7:137749600-137750000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr7:137749600-137750000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:137749600-137750000	Flanking Active TSS	Liver	Liver
13	chr7:137749600-137750000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr7:137749600-137750200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:137749600-137750200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:137749600-137750200	Flanking Active TSS	HepG2	liver
17	chr7:137749800-137750000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:137749800-137750000	Flanking Active TSS	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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