Variant report

Variant	rs6467758
Chromosome Location	chr7:137987682-137987683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10225284	0.94[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs10244164	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10259135	0.80[EUR][1000 genomes]
rs10279739	0.83[EUR][1000 genomes]
rs1421487	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs402228	0.83[AFR][1000 genomes]
rs402486	0.86[AFR][1000 genomes]
rs431358	0.87[AFR][1000 genomes]
rs60969	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs62488608	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62488633	0.83[EUR][1000 genomes]
rs6467757	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73159911	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73159924	0.83[EUR][1000 genomes]
rs7794049	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7795878	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7812254	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[MKK][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029101	chr7:137952620-138005671	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv517949	chr7:137962186-137992969	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6467758	KLRG2	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137981800-137988200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:137983200-137988000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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