Variant report

Variant	rs6467774
Chromosome Location	chr7:138150691-138150692
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:138142373..138144059-chr7:138148709..138151590,2	MCF-7	breast:
2	chr7:138146630..138151356-chr7:138166396..138170036,5	K562	blood:
3	chr7:138143936..138147345-chr7:138148503..138152143,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122779	Chromatin interaction
ENSG00000239123	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10272245	0.87[CEU][hapmap]
rs11761566	0.85[CEU][hapmap]
rs11976228	1.00[JPT][hapmap]
rs12707387	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12707388	0.86[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2353353	1.00[JPT][hapmap]
rs3213902	0.95[CEU][hapmap]
rs4535683	0.81[ASN][1000 genomes]
rs6467777	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6467779	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946420	0.95[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6947224	1.00[JPT][hapmap]
rs6962037	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6970145	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73164623	0.90[ASN][1000 genomes]
rs7782453	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7799818	0.85[CEU][hapmap];0.86[AMR][1000 genomes]
rs7803989	0.82[EUR][1000 genomes]
rs7811152	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138146800-138163200	Weak transcription	Aorta	Aorta
2	chr7:138147000-138151200	Weak transcription	Small Intestine	intestine
3	chr7:138147000-138151600	Enhancers	Liver	Liver
4	chr7:138147000-138153000	Weak transcription	Brain Anterior Caudate	brain
5	chr7:138147000-138153000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr7:138147000-138153400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr7:138147000-138153400	Weak transcription	Brain Substantia Nigra	brain
8	chr7:138147000-138153400	Weak transcription	Esophagus	oesophagus
9	chr7:138147000-138153400	Weak transcription	Fetal Stomach	stomach
10	chr7:138147000-138153400	Weak transcription	Left Ventricle	heart
11	chr7:138147000-138153400	Weak transcription	Right Ventricle	heart
12	chr7:138147000-138153400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr7:138147000-138153400	Weak transcription	Spleen	Spleen
14	chr7:138147000-138157200	Weak transcription	Gastric	stomach
15	chr7:138147000-138160200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr7:138147000-138161400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr7:138147000-138162200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr7:138147000-138162400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr7:138147000-138165000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr7:138147200-138153000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr7:138147200-138153600	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr7:138147200-138163200	Weak transcription	Fetal Thymus	thymus
23	chr7:138147200-138168400	Weak transcription	Fetal Muscle Leg	muscle
24	chr7:138147200-138183800	Weak transcription	Primary B cells from cord blood	blood
25	chr7:138147200-138189000	Weak transcription	Thymus	Thymus
26	chr7:138147400-138151000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:138147400-138151200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr7:138147400-138152800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr7:138147400-138160000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:138147600-138150800	Weak transcription	Pancreas	Pancrea
31	chr7:138147600-138151200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:138147600-138153200	Weak transcription	Brain Hippocampus Middle	brain
33	chr7:138147600-138153400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr7:138147600-138153400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr7:138147600-138153400	Weak transcription	Psoas Muscle	Psoas
36	chr7:138147600-138154600	Weak transcription	Stomach Mucosa	stomach
37	chr7:138147600-138156000	Weak transcription	HMEC	breast
38	chr7:138147600-138157400	Weak transcription	Right Atrium	heart
39	chr7:138147800-138154600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:138148200-138150800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr7:138148200-138150800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr7:138148200-138157200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr7:138148200-138160200	Weak transcription	Lung	lung
44	chr7:138148200-138163000	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr7:138148200-138164200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr7:138148400-138150800	Weak transcription	Fetal Intestine Large	intestine
47	chr7:138148400-138151200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr7:138148400-138151200	Weak transcription	Fetal Intestine Small	intestine
49	chr7:138148400-138152200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr7:138148400-138153000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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